17 import builtins
as __builtin__
21 strthis =
"proxy of " + self.this.__repr__()
22 except __builtin__.Exception:
24 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
27 def _swig_setattr_nondynamic_instance_variable(set):
28 def set_instance_attr(self, name, value):
30 set(self, name, value)
31 elif name ==
"thisown":
33 elif hasattr(self, name)
and isinstance(getattr(type(self), name), property):
34 set(self, name, value)
36 raise AttributeError(
"You cannot add instance attributes to %s" % self)
37 return set_instance_attr
40 def _swig_setattr_nondynamic_class_variable(set):
41 def set_class_attr(cls, name, value):
42 if hasattr(cls, name)
and not isinstance(getattr(cls, name), property):
45 raise AttributeError(
"You cannot add class attributes to %s" % cls)
49 class _SwigNonDynamicMeta(type):
50 """Meta class to enforce nondynamic attributes (no new attributes) for a class"""
51 __setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
56 class IMP_SYMMETRY_SwigPyIterator(object):
57 r"""Proxy of C++ swig::IMP_SYMMETRY_SwigPyIterator class."""
59 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
61 def __init__(self, *args, **kwargs):
62 raise AttributeError(
"No constructor defined - class is abstract")
64 __swig_destroy__ = _IMP_symmetry.delete_IMP_SYMMETRY_SwigPyIterator
67 r"""value(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
68 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_value(self)
71 r"""incr(IMP_SYMMETRY_SwigPyIterator self, size_t n=1) -> IMP_SYMMETRY_SwigPyIterator"""
72 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_incr(self, n)
75 r"""decr(IMP_SYMMETRY_SwigPyIterator self, size_t n=1) -> IMP_SYMMETRY_SwigPyIterator"""
76 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_decr(self, n)
78 def distance(self, x):
79 r"""distance(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> ptrdiff_t"""
80 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_distance(self, x)
83 r"""equal(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
84 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_equal(self, x)
87 r"""copy(IMP_SYMMETRY_SwigPyIterator self) -> IMP_SYMMETRY_SwigPyIterator"""
88 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_copy(self)
91 r"""__next__(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
92 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___next__(self)
95 r"""previous(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
96 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_previous(self)
99 r"""advance(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
100 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_advance(self, n)
103 r"""__eq__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
104 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___eq__(self, x)
107 r"""__ne__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
108 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___ne__(self, x)
110 def __iadd__(self, n):
111 r"""__iadd__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
112 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___iadd__(self, n)
114 def __isub__(self, n):
115 r"""__isub__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
116 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___isub__(self, n)
118 def __add__(self, n):
119 r"""__add__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
120 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___add__(self, n)
122 def __sub__(self, *args):
124 __sub__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator
125 __sub__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> ptrdiff_t
127 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___sub__(self, *args)
132 _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_swigregister(IMP_SYMMETRY_SwigPyIterator)
139 IMP_DEBUG = _IMP_symmetry.IMP_DEBUG
141 IMP_RELEASE = _IMP_symmetry.IMP_RELEASE
143 IMP_SILENT = _IMP_symmetry.IMP_SILENT
145 IMP_PROGRESS = _IMP_symmetry.IMP_PROGRESS
147 IMP_TERSE = _IMP_symmetry.IMP_TERSE
149 IMP_VERBOSE = _IMP_symmetry.IMP_VERBOSE
151 IMP_MEMORY = _IMP_symmetry.IMP_MEMORY
153 IMP_NONE = _IMP_symmetry.IMP_NONE
155 IMP_USAGE = _IMP_symmetry.IMP_USAGE
157 IMP_INTERNAL = _IMP_symmetry.IMP_INTERNAL
159 IMP_KERNEL_HAS_LOG4CXX = _IMP_symmetry.IMP_KERNEL_HAS_LOG4CXX
161 IMP_COMPILER_HAS_CEREAL_RAW_POINTER = _IMP_symmetry.IMP_COMPILER_HAS_CEREAL_RAW_POINTER
163 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_symmetry.IMP_COMPILER_HAS_DEBUG_VECTOR
165 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_symmetry.IMP_COMPILER_HAS_RANDOM_SHUFFLE
167 IMP_COMPILER_HAS_THREE_WAY = _IMP_symmetry.IMP_COMPILER_HAS_THREE_WAY
169 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_KERNEL_HAS_BOOST_RANDOM
171 IMP_KERNEL_HAS_NUMPY = _IMP_symmetry.IMP_KERNEL_HAS_NUMPY
173 IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_KERNEL_HAS_BOOST_SYSTEM
175 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_symmetry.IMP_KERNEL_HAS_GPERFTOOLS
177 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_symmetry.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
179 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_symmetry.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
181 IMPKERNEL_SHOW_WARNINGS = _IMP_symmetry.IMPKERNEL_SHOW_WARNINGS
185 class _DirectorObjects:
186 """@internal Simple class to keep references to director objects
187 to prevent premature deletion."""
190 def register(self, obj):
191 """Take a reference to a director object; will only work for
192 refcounted C++ classes"""
193 if hasattr(obj,
'get_ref_count'):
194 self._objects.append(obj)
196 """Only drop our reference and allow cleanup by Python if no other
197 Python references exist (we hold 3 references: one in self._objects,
198 one in x, and one in the argument list for getrefcount) *and* no
199 other C++ references exist (the Python object always holds one)"""
200 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
201 or x.get_ref_count() > 1]
205 def get_object_count(self):
206 """Get number of director objects (useful for testing only)"""
207 return len(self._objects)
208 _director_objects = _DirectorObjects()
210 class _ostream(object):
211 r"""Proxy of C++ std::ostream class."""
213 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
215 def __init__(self, *args, **kwargs):
216 raise AttributeError(
"No constructor defined")
217 __repr__ = _swig_repr
219 def write(self, osa_buf):
220 r"""write(_ostream self, char const * osa_buf)"""
221 return _IMP_symmetry._ostream_write(self, osa_buf)
224 _IMP_symmetry._ostream_swigregister(_ostream)
225 IMP_C_OPEN_BINARY = _IMP_symmetry.IMP_C_OPEN_BINARY
228 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_FILESYSTEM
230 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
232 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_RANDOM
234 IMP_CGAL_HAS_NUMPY = _IMP_symmetry.IMP_CGAL_HAS_NUMPY
236 IMPCGAL_SHOW_WARNINGS = _IMP_symmetry.IMPCGAL_SHOW_WARNINGS
239 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_symmetry.IMP_ALGEBRA_HAS_IMP_CGAL
241 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
243 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
245 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_RANDOM
247 IMP_ALGEBRA_HAS_CGAL = _IMP_symmetry.IMP_ALGEBRA_HAS_CGAL
249 IMP_ALGEBRA_HAS_NUMPY = _IMP_symmetry.IMP_ALGEBRA_HAS_NUMPY
251 IMP_ALGEBRA_HAS_ANN = _IMP_symmetry.IMP_ALGEBRA_HAS_ANN
253 IMPALGEBRA_SHOW_WARNINGS = _IMP_symmetry.IMPALGEBRA_SHOW_WARNINGS
256 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_symmetry.IMP_DISPLAY_HAS_IMP_CGAL
258 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
260 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
262 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_RANDOM
264 IMP_DISPLAY_HAS_CGAL = _IMP_symmetry.IMP_DISPLAY_HAS_CGAL
266 IMP_DISPLAY_HAS_NUMPY = _IMP_symmetry.IMP_DISPLAY_HAS_NUMPY
268 IMPDISPLAY_SHOW_WARNINGS = _IMP_symmetry.IMPDISPLAY_SHOW_WARNINGS
271 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
273 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
275 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
277 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
279 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_CGAL
281 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_HDF5
283 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_NUMPY
285 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_symmetry.IMPSCOREFUNCTOR_SHOW_WARNINGS
288 IMP_CORE_HAS_IMP_CGAL = _IMP_symmetry.IMP_CORE_HAS_IMP_CGAL
290 IMP_CORE_HAS_IMP_KERNEL = _IMP_symmetry.IMP_CORE_HAS_IMP_KERNEL
292 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_CORE_HAS_BOOST_FILESYSTEM
294 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
296 IMP_CORE_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_CORE_HAS_BOOST_RANDOM
298 IMP_CORE_HAS_CGAL = _IMP_symmetry.IMP_CORE_HAS_CGAL
300 IMP_CORE_HAS_HDF5 = _IMP_symmetry.IMP_CORE_HAS_HDF5
302 IMP_CORE_HAS_NUMPY = _IMP_symmetry.IMP_CORE_HAS_NUMPY
304 IMPCORE_SHOW_WARNINGS = _IMP_symmetry.IMPCORE_SHOW_WARNINGS
307 IMP_SYMMETRY_HAS_IMP_CGAL = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_CGAL
309 IMP_SYMMETRY_HAS_IMP_DISPLAY = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_DISPLAY
311 IMP_SYMMETRY_HAS_IMP_KERNEL = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_KERNEL
313 IMP_SYMMETRY_HAS_IMP_SCORE_FUNCTOR = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_SCORE_FUNCTOR
315 IMP_SYMMETRY_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_FILESYSTEM
317 IMP_SYMMETRY_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_PROGRAMOPTIONS
319 IMP_SYMMETRY_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_RANDOM
321 IMP_SYMMETRY_HAS_CGAL = _IMP_symmetry.IMP_SYMMETRY_HAS_CGAL
323 IMP_SYMMETRY_HAS_HDF5 = _IMP_symmetry.IMP_SYMMETRY_HAS_HDF5
325 IMP_SYMMETRY_HAS_NUMPY = _IMP_symmetry.IMP_SYMMETRY_HAS_NUMPY
327 IMP_SYMMETRY_HAS_PYTHON_IHM = _IMP_symmetry.IMP_SYMMETRY_HAS_PYTHON_IHM
329 IMPSYMMETRY_SHOW_WARNINGS = _IMP_symmetry.IMPSYMMETRY_SHOW_WARNINGS
332 _object_types.append(
"BallMover")
335 _object_types.append(
"RigidBodyMover")
338 r"""Proxy of C++ IMP::symmetry::BallMover class."""
340 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
342 def __init__(self, p, ps, max_tr, ctrs, trs):
343 r"""__init__(BallMover self, Particle p, IMP::Particles ps, IMP::Float max_tr, IMP::algebra::Vector3Ds ctrs, IMP::algebra::Transformation3Ds trs) -> BallMover"""
344 _IMP_symmetry.BallMover_swiginit(self, _IMP_symmetry.new_BallMover(p, ps, max_tr, ctrs, trs))
346 def get_version_info(self):
347 r"""get_version_info(BallMover self) -> VersionInfo"""
348 return _IMP_symmetry.BallMover_get_version_info(self)
349 __swig_destroy__ = _IMP_symmetry.delete_BallMover
352 r"""__str__(BallMover self) -> std::string"""
353 return _IMP_symmetry.BallMover___str__(self)
356 r"""__repr__(BallMover self) -> std::string"""
357 return _IMP_symmetry.BallMover___repr__(self)
361 return _object_cast_to_BallMover(o)
365 _IMP_symmetry.BallMover_swigregister(BallMover)
367 r"""Proxy of C++ IMP::symmetry::RigidBodyMover class."""
369 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
371 def __init__(self, d, ps, max_tr, max_ang, ctrs, trs):
372 r"""__init__(RigidBodyMover self, RigidBody d, IMP::Particles ps, IMP::Float max_tr, IMP::Float max_ang, IMP::algebra::Vector3Ds ctrs, IMP::algebra::Transformation3Ds trs) -> RigidBodyMover"""
373 _IMP_symmetry.RigidBodyMover_swiginit(self, _IMP_symmetry.new_RigidBodyMover(d, ps, max_tr, max_ang, ctrs, trs))
375 def get_version_info(self):
376 r"""get_version_info(RigidBodyMover self) -> VersionInfo"""
377 return _IMP_symmetry.RigidBodyMover_get_version_info(self)
378 __swig_destroy__ = _IMP_symmetry.delete_RigidBodyMover
381 r"""__str__(RigidBodyMover self) -> std::string"""
382 return _IMP_symmetry.RigidBodyMover___str__(self)
385 r"""__repr__(RigidBodyMover self) -> std::string"""
386 return _IMP_symmetry.RigidBodyMover___repr__(self)
390 return _object_cast_to_RigidBodyMover(o)
394 _IMP_symmetry.RigidBodyMover_swigregister(RigidBodyMover)
397 r"""get_module_name() -> std::string const"""
398 return _IMP_symmetry.get_module_name()
401 r"""get_module_version() -> std::string const"""
402 return _IMP_symmetry.get_module_version()
405 r"""get_example_path(std::string fname) -> std::string"""
406 return _IMP_symmetry.get_example_path(fname)
409 r"""get_data_path(std::string fname) -> std::string"""
410 return _IMP_symmetry.get_data_path(fname)
412 from .
import _version_check
def get_data_path
Return the full path to one of this module's data files.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
def get_example_path
Return the full path to one of this module's example files.
def get_module_version
Return the version of this module, as a string.
A base class for classes which perturb particles.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
def get_module_name
Return the fully-qualified name of this module.
Output IMP model data in various file formats.