17 import builtins
as __builtin__
21 strthis =
"proxy of " + self.this.__repr__()
22 except __builtin__.Exception:
24 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
27 def _swig_setattr_nondynamic_instance_variable(set):
28 def set_instance_attr(self, name, value):
30 set(self, name, value)
31 elif name ==
"thisown":
33 elif hasattr(self, name)
and isinstance(getattr(type(self), name), property):
34 set(self, name, value)
36 raise AttributeError(
"You cannot add instance attributes to %s" % self)
37 return set_instance_attr
40 def _swig_setattr_nondynamic_class_variable(set):
41 def set_class_attr(cls, name, value):
42 if hasattr(cls, name)
and not isinstance(getattr(cls, name), property):
45 raise AttributeError(
"You cannot add class attributes to %s" % cls)
49 class _SwigNonDynamicMeta(type):
50 """Meta class to enforce nondynamic attributes (no new attributes) for a class"""
51 __setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
56 class IMP_SCRATCH_SwigPyIterator(object):
57 r"""Proxy of C++ swig::IMP_SCRATCH_SwigPyIterator class."""
59 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
61 def __init__(self, *args, **kwargs):
62 raise AttributeError(
"No constructor defined - class is abstract")
64 __swig_destroy__ = _IMP_scratch.delete_IMP_SCRATCH_SwigPyIterator
67 r"""value(IMP_SCRATCH_SwigPyIterator self) -> PyObject *"""
68 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_value(self)
71 r"""incr(IMP_SCRATCH_SwigPyIterator self, size_t n=1) -> IMP_SCRATCH_SwigPyIterator"""
72 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_incr(self, n)
75 r"""decr(IMP_SCRATCH_SwigPyIterator self, size_t n=1) -> IMP_SCRATCH_SwigPyIterator"""
76 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_decr(self, n)
78 def distance(self, x):
79 r"""distance(IMP_SCRATCH_SwigPyIterator self, IMP_SCRATCH_SwigPyIterator x) -> ptrdiff_t"""
80 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_distance(self, x)
83 r"""equal(IMP_SCRATCH_SwigPyIterator self, IMP_SCRATCH_SwigPyIterator x) -> bool"""
84 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_equal(self, x)
87 r"""copy(IMP_SCRATCH_SwigPyIterator self) -> IMP_SCRATCH_SwigPyIterator"""
88 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_copy(self)
91 r"""__next__(IMP_SCRATCH_SwigPyIterator self) -> PyObject *"""
92 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___next__(self)
95 r"""previous(IMP_SCRATCH_SwigPyIterator self) -> PyObject *"""
96 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_previous(self)
99 r"""advance(IMP_SCRATCH_SwigPyIterator self, ptrdiff_t n) -> IMP_SCRATCH_SwigPyIterator"""
100 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator_advance(self, n)
103 r"""__eq__(IMP_SCRATCH_SwigPyIterator self, IMP_SCRATCH_SwigPyIterator x) -> bool"""
104 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___eq__(self, x)
107 r"""__ne__(IMP_SCRATCH_SwigPyIterator self, IMP_SCRATCH_SwigPyIterator x) -> bool"""
108 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___ne__(self, x)
110 def __iadd__(self, n):
111 r"""__iadd__(IMP_SCRATCH_SwigPyIterator self, ptrdiff_t n) -> IMP_SCRATCH_SwigPyIterator"""
112 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___iadd__(self, n)
114 def __isub__(self, n):
115 r"""__isub__(IMP_SCRATCH_SwigPyIterator self, ptrdiff_t n) -> IMP_SCRATCH_SwigPyIterator"""
116 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___isub__(self, n)
118 def __add__(self, n):
119 r"""__add__(IMP_SCRATCH_SwigPyIterator self, ptrdiff_t n) -> IMP_SCRATCH_SwigPyIterator"""
120 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___add__(self, n)
122 def __sub__(self, *args):
124 __sub__(IMP_SCRATCH_SwigPyIterator self, ptrdiff_t n) -> IMP_SCRATCH_SwigPyIterator
125 __sub__(IMP_SCRATCH_SwigPyIterator self, IMP_SCRATCH_SwigPyIterator x) -> ptrdiff_t
127 return _IMP_scratch.IMP_SCRATCH_SwigPyIterator___sub__(self, *args)
132 _IMP_scratch.IMP_SCRATCH_SwigPyIterator_swigregister(IMP_SCRATCH_SwigPyIterator)
139 IMP_DEBUG = _IMP_scratch.IMP_DEBUG
141 IMP_RELEASE = _IMP_scratch.IMP_RELEASE
143 IMP_SILENT = _IMP_scratch.IMP_SILENT
145 IMP_PROGRESS = _IMP_scratch.IMP_PROGRESS
147 IMP_TERSE = _IMP_scratch.IMP_TERSE
149 IMP_VERBOSE = _IMP_scratch.IMP_VERBOSE
151 IMP_MEMORY = _IMP_scratch.IMP_MEMORY
153 IMP_NONE = _IMP_scratch.IMP_NONE
155 IMP_USAGE = _IMP_scratch.IMP_USAGE
157 IMP_INTERNAL = _IMP_scratch.IMP_INTERNAL
159 IMP_KERNEL_HAS_LOG4CXX = _IMP_scratch.IMP_KERNEL_HAS_LOG4CXX
161 IMP_COMPILER_HAS_CEREAL_RAW_POINTER = _IMP_scratch.IMP_COMPILER_HAS_CEREAL_RAW_POINTER
163 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_scratch.IMP_COMPILER_HAS_DEBUG_VECTOR
165 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_scratch.IMP_COMPILER_HAS_RANDOM_SHUFFLE
167 IMP_COMPILER_HAS_THREE_WAY = _IMP_scratch.IMP_COMPILER_HAS_THREE_WAY
169 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_scratch.IMP_KERNEL_HAS_BOOST_RANDOM
171 IMP_KERNEL_HAS_NUMPY = _IMP_scratch.IMP_KERNEL_HAS_NUMPY
173 IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_scratch.IMP_KERNEL_HAS_BOOST_SYSTEM
175 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_scratch.IMP_KERNEL_HAS_GPERFTOOLS
177 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_scratch.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
179 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_scratch.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
181 IMPKERNEL_SHOW_WARNINGS = _IMP_scratch.IMPKERNEL_SHOW_WARNINGS
185 class _DirectorObjects:
186 """@internal Simple class to keep references to director objects
187 to prevent premature deletion."""
190 def register(self, obj):
191 """Take a reference to a director object; will only work for
192 refcounted C++ classes"""
193 if hasattr(obj,
'get_ref_count'):
194 self._objects.append(obj)
196 """Only drop our reference and allow cleanup by Python if no other
197 Python references exist (we hold 3 references: one in self._objects,
198 one in x, and one in the argument list for getrefcount) *and* no
199 other C++ references exist (the Python object always holds one)"""
200 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
201 or x.get_ref_count() > 1]
205 def get_object_count(self):
206 """Get number of director objects (useful for testing only)"""
207 return len(self._objects)
208 _director_objects = _DirectorObjects()
210 class _ostream(object):
211 r"""Proxy of C++ std::ostream class."""
213 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
215 def __init__(self, *args, **kwargs):
216 raise AttributeError(
"No constructor defined")
217 __repr__ = _swig_repr
219 def write(self, osa_buf):
220 r"""write(_ostream self, char const * osa_buf)"""
221 return _IMP_scratch._ostream_write(self, osa_buf)
224 _IMP_scratch._ostream_swigregister(_ostream)
225 IMP_C_OPEN_BINARY = _IMP_scratch.IMP_C_OPEN_BINARY
228 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_CGAL_HAS_BOOST_FILESYSTEM
230 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
232 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_scratch.IMP_CGAL_HAS_BOOST_RANDOM
234 IMP_CGAL_HAS_NUMPY = _IMP_scratch.IMP_CGAL_HAS_NUMPY
236 IMPCGAL_SHOW_WARNINGS = _IMP_scratch.IMPCGAL_SHOW_WARNINGS
239 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_scratch.IMP_ALGEBRA_HAS_IMP_CGAL
241 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
243 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
245 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_scratch.IMP_ALGEBRA_HAS_BOOST_RANDOM
247 IMP_ALGEBRA_HAS_CGAL = _IMP_scratch.IMP_ALGEBRA_HAS_CGAL
249 IMP_ALGEBRA_HAS_NUMPY = _IMP_scratch.IMP_ALGEBRA_HAS_NUMPY
251 IMP_ALGEBRA_HAS_ANN = _IMP_scratch.IMP_ALGEBRA_HAS_ANN
253 IMPALGEBRA_SHOW_WARNINGS = _IMP_scratch.IMPALGEBRA_SHOW_WARNINGS
256 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_scratch.IMP_DISPLAY_HAS_IMP_CGAL
258 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
260 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
262 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_scratch.IMP_DISPLAY_HAS_BOOST_RANDOM
264 IMP_DISPLAY_HAS_CGAL = _IMP_scratch.IMP_DISPLAY_HAS_CGAL
266 IMP_DISPLAY_HAS_NUMPY = _IMP_scratch.IMP_DISPLAY_HAS_NUMPY
268 IMPDISPLAY_SHOW_WARNINGS = _IMP_scratch.IMPDISPLAY_SHOW_WARNINGS
271 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
273 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
275 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
277 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
279 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_CGAL
281 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_HDF5
283 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_scratch.IMP_SCORE_FUNCTOR_HAS_NUMPY
285 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_scratch.IMPSCOREFUNCTOR_SHOW_WARNINGS
288 IMP_CORE_HAS_IMP_CGAL = _IMP_scratch.IMP_CORE_HAS_IMP_CGAL
290 IMP_CORE_HAS_IMP_KERNEL = _IMP_scratch.IMP_CORE_HAS_IMP_KERNEL
292 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_CORE_HAS_BOOST_FILESYSTEM
294 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
296 IMP_CORE_HAS_BOOST_RANDOM = _IMP_scratch.IMP_CORE_HAS_BOOST_RANDOM
298 IMP_CORE_HAS_CGAL = _IMP_scratch.IMP_CORE_HAS_CGAL
300 IMP_CORE_HAS_HDF5 = _IMP_scratch.IMP_CORE_HAS_HDF5
302 IMP_CORE_HAS_NUMPY = _IMP_scratch.IMP_CORE_HAS_NUMPY
304 IMPCORE_SHOW_WARNINGS = _IMP_scratch.IMPCORE_SHOW_WARNINGS
307 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_scratch.IMP_CONTAINER_HAS_IMP_ALGEBRA
309 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_scratch.IMP_CONTAINER_HAS_IMP_CGAL
311 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_scratch.IMP_CONTAINER_HAS_IMP_DISPLAY
313 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_scratch.IMP_CONTAINER_HAS_IMP_KERNEL
315 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_scratch.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
317 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
319 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
321 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_scratch.IMP_CONTAINER_HAS_BOOST_RANDOM
323 IMP_CONTAINER_HAS_CGAL = _IMP_scratch.IMP_CONTAINER_HAS_CGAL
325 IMP_CONTAINER_HAS_HDF5 = _IMP_scratch.IMP_CONTAINER_HAS_HDF5
327 IMP_CONTAINER_HAS_NUMPY = _IMP_scratch.IMP_CONTAINER_HAS_NUMPY
329 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_scratch.IMP_CONTAINER_HAS_PYTHON_IHM
331 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_scratch.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
333 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_scratch.IMP_CONTAINER_HAS_ROBIN_MAP
335 IMPCONTAINER_SHOW_WARNINGS = _IMP_scratch.IMPCONTAINER_SHOW_WARNINGS
338 IMP_SCRATCH_HAS_IMP_ALGEBRA = _IMP_scratch.IMP_SCRATCH_HAS_IMP_ALGEBRA
340 IMP_SCRATCH_HAS_IMP_CGAL = _IMP_scratch.IMP_SCRATCH_HAS_IMP_CGAL
342 IMP_SCRATCH_HAS_IMP_DISPLAY = _IMP_scratch.IMP_SCRATCH_HAS_IMP_DISPLAY
344 IMP_SCRATCH_HAS_IMP_KERNEL = _IMP_scratch.IMP_SCRATCH_HAS_IMP_KERNEL
346 IMP_SCRATCH_HAS_IMP_SCORE_FUNCTOR = _IMP_scratch.IMP_SCRATCH_HAS_IMP_SCORE_FUNCTOR
348 IMP_SCRATCH_HAS_BOOST_FILESYSTEM = _IMP_scratch.IMP_SCRATCH_HAS_BOOST_FILESYSTEM
350 IMP_SCRATCH_HAS_BOOST_PROGRAMOPTIONS = _IMP_scratch.IMP_SCRATCH_HAS_BOOST_PROGRAMOPTIONS
352 IMP_SCRATCH_HAS_BOOST_RANDOM = _IMP_scratch.IMP_SCRATCH_HAS_BOOST_RANDOM
354 IMP_SCRATCH_HAS_CGAL = _IMP_scratch.IMP_SCRATCH_HAS_CGAL
356 IMP_SCRATCH_HAS_HDF5 = _IMP_scratch.IMP_SCRATCH_HAS_HDF5
358 IMP_SCRATCH_HAS_NUMPY = _IMP_scratch.IMP_SCRATCH_HAS_NUMPY
360 IMP_SCRATCH_HAS_PYTHON_IHM = _IMP_scratch.IMP_SCRATCH_HAS_PYTHON_IHM
362 IMPSCRATCH_SHOW_WARNINGS = _IMP_scratch.IMPSCRATCH_SHOW_WARNINGS
366 r"""get_module_name() -> std::string const"""
367 return _IMP_scratch.get_module_name()
370 r"""get_module_version() -> std::string const"""
371 return _IMP_scratch.get_module_version()
374 r"""get_example_path(std::string fname) -> std::string"""
375 return _IMP_scratch.get_example_path(fname)
378 r"""get_data_path(std::string fname) -> std::string"""
379 return _IMP_scratch.get_data_path(fname)
381 from .
import _version_check
def get_data_path
Return the full path to one of this module's data files.
def get_module_version
Return the version of this module, as a string.
def get_example_path
Return the full path to one of this module's example files.
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
def get_module_name
Return the fully-qualified name of this module.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.