|directories|
|pdb_dir|./|
|fasta_dir|./|
|gmm_dir|./|

|topology_dictionary|
|component_name|domain_name|fasta_fn|fasta_id|pdb_fn|chain|residue_range|pdb_offset|bead_size|em_residues_per_gaussian|
|detgnt |detgnt_99|FASTA_detgnt.txt|detgnt|BEADS|A|9000,9249|0|250|250|
|pom152 |pom152_11|FASTA_pom152.txt|pom152|BEADS|A|1,378   |0|50|50|
