|directories|
|pdb_dir|./|
|fasta_dir|./|
|gmm_dir|./|

|topology_dictionary|
|component_name|domain_name|fasta_fn|fasta_id|pdb_fn|chain|residue_range|pdb_offset|bead_size|em_residues_per_gaussian|
|Rpb1 |Rpb1_1|1WCM.fasta.txt|1WCM:A|1WCM_map_fitted.pdb|A|1,1140   |0|5|0 |
|Rpb1 |Rpb1_2|1WCM.fasta.txt|1WCM:A|1WCM_map_fitted.pdb|A|1141,1274|0|5|0 |
|Rpb4 |Rpb4  |1WCM.fasta.txt|1WCM:D|1WCM_map_fitted.pdb|D|all      |0|5|40|
