show_exceptions=['ElementTable']
value_object_exceptions=['ElementTable']
function_name_exceptions=['transform',
                          'BrownianDynamics.simulate',
                          'BrownianDynamics.simulate_wave',
                          'MolecularDynamics.assign_velocities',
                          'VelocityScalingOptimizerState.rescale_velocities',
                          'Simulator.simulate',
                          'Simulator.simulate_wave',
                          'MolecularDynamics.simulate',
                          'MolecularDynamics.simulate_wave',
                          'BerendsenThermostatOptimizerState.rescale_velocities',
                          'LangevinThermostatOptimizerState.rescale_velocities',
                          'get_all_atom_CHARMM_parameters',
                          'get_heavy_atom_CHARMM_parameters']
spelling_exceptions=['lennard', 'charmm', "jones",
                     "impropers", "ez",
                     "rmsd", "pdb", "multimodel", "conect",
                     'rescale',
                     'berendsen', 'langevin', 'runge', 'kutta']
