isd Directory Reference

Directory dependency graph for isd:

Files
file	AmbiguousNOERestraint.h [code]
	A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
file	AmbiguousRestraint.h [code]
	An implementation of the d-norm to make an ambiguous restraint.
file	bivariate_functions.h [code]
	Classes for general functions.
file	FNormal.h [code]
	Normal distribution of Function.
file	GaussianProcessInterpolation.h [code]
	Normal distribution of Function.
file	GaussianProcessInterpolationRestraint.h [code]
	Restraint and ScoreState for GaussianProcessInterpolation.
file	GaussianProcessInterpolationRestraintSparse.h [code]
	Normal distribution of Function.
file	GaussianProcessInterpolationSparse.h [code]
	Normal distribution of Function.
file	GaussianRestraint.h [code]
	A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
file	HybridMonteCarlo.h [code]
	A hybrid monte carlo implementation.
file	isd_config.h [code]
file	ISDRestraint.h [code]
	A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
file	JeffreysRestraint.h [code]
	A restraint on a scale parameter.
file	LogicalORRestraint.h [code]
	A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
file	LognormalRestraint.h [code]
	A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
file	MaintainScaleOrderConstraint.h [code]
	Constrain scales to be ordered and positive.
file	MarginalHBondRestraint.h [code]
	A lognormal restraint that uses the ISPA model to model HBond-derived distance fit.
file	MarginalNOERestraint.h [code]
	A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
file	isd/MolecularDynamics.h [code]
	Simple molecular dynamics optimizer.
file	MolecularDynamicsMover.h [code]
	A modifier which perturbs XYZs or Nuisances with a constant energy MD simulation.
file	MultivariateFNormalSufficient.h [code]
	Normal distribution of Function.
file	MultivariateFNormalSufficientSparse.h [code]
	Normal distribution of Function.
file	NOERestraint.h [code]
	A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
file	Nuisance.h [code]
	A decorator for nuisance parameters particles.
file	NuisanceRangeModifier.h [code]
	A singleton modifier which wraps an attribute into a given range.
file	RepulsiveDistancePairScore.h [code]
	A simple quadric repulsive term between two atoms. Restraint is zero when the distance equals the sum of the radii plus the shift.
file	Scale.h [code]
	A decorator for scale parameters particles.
file	SlidingPriorRestraint.h [code]
	A restraint on a scale parameter.
file	Switching.h [code]
	A decorator for switching parameters particles.
file	TALOSRestraint.h [code]
	TALOS dihedral restraint between four particles.
file	univariate_functions.h [code]
	Classes for general functions.
file	vonMises.h [code]
	Normal distribution of Function.
file	vonMisesKappaConjugateRestraint.h [code]
	Conjugate prior for \(\kappa\) in the von Mises distribution.
file	vonMisesKappaJeffreysRestraint.h [code]
	Jeffreys prior for \(\kappa\) in the von Mises distribution.
file	vonMisesSufficient.h [code]
	Normal distribution of Function.