show_exceptions=['ElementTable']
value_object_exceptions=['ElementTable']
function_name_exceptions=['transform',
                                            'BrownianDynamics.simulate',
                                            'MolecularDynamics.assign_velocities',
                                            'VelocityScalingOptimizerState.rescale_velocities',
                                            'BrownianDynamics.simulate',
                                            'Simulator.simulate',
                                            'MolecularDynamics.simulate',
                                            'BerendsenThermostatOptimizerState.rescale_velocities',
                                            'LangevinThermostatOptimizerState.rescale_velocities',
                                            'get_all_atom_CHARMM_parameters',
                                            'get_heavy_atom_CHARMM_parameters']
spelling_exceptions=['lennard', 'charmm', "jones",
                                       "impropers",
                                       "rmsd", "pdb", "multimodel", "conect",
                                       'rescale',
                                       'berendsen', 'langevin', 'runge', 'kutta']