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Namespaces | |
| namespace | IMP |
The IMP kernel provides base classes and key shared functionality. | |
| namespace | IMP::em |
| This module allows density maps to be used to generate restraints. | |
Functions | |
| Float | IMP::em::compute_fitting_score (Particles &ps, DensityMap *em_map, FloatKey rad_key=core::XYZR::get_default_radius_key(), FloatKey wei_key=atom::Mass::get_mass_key()) |
| Compute fitting scores for a given set of rigid transformations. | |
| FittingSolutions | IMP::em::compute_fitting_scores (Particles &ps, DensityMap *em_map, const FloatKey &rad_key, const FloatKey &wei_key, const std::vector< IMP::algebra::Transformation3D > &transformations, bool fast_version=false) |
| Compute fitting scores for a given set of rigid transformations. | |
| FittingSolutions | IMP::em::local_rigid_fitting (core::RigidBody &rb, const FloatKey &radius_key, const FloatKey &weight_key, DensityMap *dmap, OptimizerState *display_log=NULL, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=5.) |
| Local rigid fitting of a rigid body. | |
| FittingSolutions | IMP::em::local_rigid_fitting_around_point (core::RigidBody &rb, const FloatKey &radius_key, const FloatKey &weight_key, DensityMap *dmap, const algebra::VectorD< 3 > &anchor_centroid, OptimizerState *display_log, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=5.) |
| Local rigid fitting of a rigid body around a center point. | |
| FittingSolutions | IMP::em::local_rigid_fitting_around_points (core::RigidBody &rb, const FloatKey &rad_key, const FloatKey &wei_key, DensityMap *dmap, const std::vector< algebra::VectorD< 3 > > &anchor_centroids, OptimizerState *display_log, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=5.) |
| Local rigid fitting of a rigid body around a set of center points. | |
| FittingSolutions | IMP::em::local_rigid_fitting_grid_search (Particles &ps, const FloatKey &rad_key, const FloatKey &wei_key, DensityMap *dmap, Int max_voxels_translation=2, Int translation_step=1, Float max_angle_in_radians=0.174, Int number_of_rotations=100) |
| Local grid search rigid fitting. | |
Copyright 2007-2010 IMP Inventors. All rights reserved.
