- g -

• gather() : IMP::core::Hierarchy
• gather_by_attribute() : IMP::core::Hierarchy
• gather_by_attributes() : IMP::core::Hierarchy
• generate_angles() : IMP::atom::CHARMMParameters
• generate_dihedrals() : IMP::atom::CHARMMParameters
• generate_move() : IMP::core::MoverBase
• get() : IMP::WeakPointer< O >
• get_a() : IMP::algebra::LinearFit , IMP::algebra::ParabolicFit
• get_all_descendants() : IMP::core::Hierarchy
• get_all_restraints_by_name() : IMP::restrainer::Restraint
• get_all_rigid_bodies() : IMP::restrainer::Restraint
• get_all_strings() : IMP::KeyBase< ID, LazyAdd >
• get_angle() : IMP::algebra::Cone3D , IMP::algebra::Rotation2D
• get_angle_parameters() : IMP::atom::CHARMMParameters
• get_atom() : IMP::atom::CHARMMBondEndpoint , IMP::atom::Hierarchy
• get_atoms() : IMP::atom::CHARMMBond< D >
• get_axis_and_angle() : IMP::algebra::Rotation3D
• get_b() : IMP::algebra::LinearFit , IMP::algebra::ParabolicFit
• get_ball_radius_from_volume_3d() : IMP::algebra::SphereD< D >
• get_base_plane() : IMP::algebra::Cone3D
• get_basis_vector_d() : IMP::algebra::VectorD< D >
• get_begin_index() : IMP::atom::Domain
• get_bin_size() : IMP::saxs::Distribution< ValueT >
• get_bond() : IMP::atom::Bonded
• get_bond_parameters() : IMP::atom::CHARMMParameters
• get_bonded() : IMP::atom::Bonded , IMP::atom::Bond
• get_boundary_point() : IMP::algebra::SpherePatch3D
• get_bounding_box() : IMP::algebra::BoundingBoxD< D >
• get_bounding_sphere() : IMP::atom::Hierarchy
• get_by_type() : IMP::atom::Hierarchy
• get_c() : IMP::algebra::ParabolicFit
• get_can_refine() : IMP::Refiner
• get_cartesian_coordinates() : IMP::algebra::SphericalVector3D
• get_centroid() : IMP::em::DensityMap , IMP::algebra::VectorD< D >
• get_chain() : IMP::atom::Residue
• get_child() : IMP::atom::Hierarchy
• get_child_index() : IMP::core::Hierarchy
• get_cluster() : IMP::statistics::PartitionalClustering
• get_cluster_representative() : IMP::statistics::PartitionalClustering
• get_component_name() : IMP::domino::JunctionTree
• get_components() : IMP::display::Geometry
• get_connected_pairs() : IMP::core::ConnectivityRestraint
• get_contained_particles() : IMP::Container
• get_contained_particles_changed() : IMP::Container
• get_contains() : IMP::algebra::BoundingBoxD< D > , IMP::algebra::SphereD< D > , IMP::algebra::SpherePatch3D , IMP::misc::LogPairScore
• get_contains_particle() : IMP::SingletonContainer , IMP::SingletonFilter
• get_contains_particle_pair() : IMP::PairContainer , IMP::PairFilter
• get_contains_particle_quad() : IMP::QuadContainer , IMP::QuadFilter
• get_contains_particle_triplet() : IMP::TripletFilter , IMP::TripletContainer
• get_contains_residue() : IMP::atom::Fragment
• get_coordinate() : IMP::core::XYZ
• get_coordinates() : IMP::core::XYZ , IMP::core::RigidBody
• get_coordinates_are_optimized() : IMP::core::XYZ
• get_corner() : IMP::algebra::BoundingBoxD< D >
• get_count() : IMP::core::HierarchyCounter
• get_D_key() : IMP::atom::Diffusion
• get_data() : IMP::em::Image< T > , IMP::em::Volume< T >
• get_data_type() : IMP::em::DensityHeader
• get_default_radius_key() : IMP::core::XYZR
• get_default_traits() : IMP::core::Hierarchy
• get_delta_q() : IMP::saxs::Profile
• get_density() : IMP::em::DensityMap
• get_derivative() : IMP::algebra::Rotation3D , IMP::core::XYZ
• get_derivatives() : IMP::core::XYZ
• get_dihedral_parameters() : IMP::atom::CHARMMParameters
• get_dimensions() : IMP::em::ImageHeader
• get_direction() : IMP::algebra::Cone3D , IMP::algebra::Segment3D
• get_distance() : IMP::algebra::Plane3D , IMP::algebra::Rotation3D , IMP::algebra::Segment3D , IMP::algebra::SphereD< D > , IMP::algebra::VectorD< D > , IMP::core::XYZ , IMP::core::XYZR
• get_element() : IMP::atom::ElementTable
• get_enclosing_sphere() : IMP::algebra::SphereD< D > , IMP::algebra::VectorD< D > , IMP::core::XYZR
• get_end_index() : IMP::atom::Domain
• get_epsilon() : IMP::atom::ForceFieldParameters
• get_fAngle1() : IMP::em::ImageHeader
• get_fFlag() : IMP::em::ImageHeader
• get_finish() : IMP::algebra::MultiArray< T, D >
• get_fit_error() : IMP::algebra::LinearFit , IMP::algebra::ParabolicFit
• get_fixed_zyz_from_rotation() : IMP::algebra::FixedZYZ
• get_float() : IMP::core::MoverBase
• get_float_key() : IMP::core::MoverBase
• get_form_factor() : IMP::saxs::FormFactorTable
• get_form_factors() : IMP::saxs::FormFactorTable
• get_grid_surface_cover() : IMP::algebra::Cylinder3D
• get_has_float_keys() : IMP::core::MoverBase
• get_has_int_keys() : IMP::core::MoverBase
• get_has_movers() : IMP::core::MonteCarlo
• get_has_optimizer_states() : IMP::Optimizer
• get_has_pair_containers() : IMP::container::PairContainerSet
• get_has_pair_filters() : IMP::container::CloseBipartitePairContainer , IMP::container::ClosePairContainer
• get_has_quad_containers() : IMP::container::QuadContainerSet
• get_has_residues() : IMP::atom::CHARMMSegmentTopology
• get_has_resolution() : IMP::em::DensityHeader
• get_has_restraints() : IMP::Model , IMP::RestraintSet
• get_has_score_states() : IMP::Model
• get_has_segments() : IMP::atom::CHARMMTopology
• get_has_singleton_containers() : IMP::container::SingletonContainerSet
• get_has_triplet_containers() : IMP::container::TripletContainerSet
• get_header() : IMP::em::Image< T > , IMP::em::Volume< T >
• get_header_size() : IMP::em::ImageHeader
• get_header_writable() : IMP::em::DensityMap
• get_id() : IMP::atom::Chain
• get_id_key() : IMP::atom::Chain
• get_identity_rotation_3d() : IMP::algebra::Rotation3D
• get_identity_transformation_2d() : IMP::algebra::Transformation2D
• get_identity_transformation_3d() : IMP::algebra::Transformation3D
• get_image_type() : IMP::em::ImageHeader
• get_imp_hierarchy_by_id() : IMP::restrainer::Representation
• get_improper_parameters() : IMP::atom::CHARMMParameters
• get_index() : IMP::atom::Residue
• get_input_containers() : IMP::PairModifier , IMP::PairScore , IMP::QuadModifier , IMP::QuadScore , IMP::Refiner , IMP::SingletonModifier , IMP::SingletonScore , IMP::TripletModifier , IMP::TripletScore , IMP::Container
• get_input_file_name() : IMP::test::TestCase
• get_input_particles() : IMP::PairModifier , IMP::PairScore , IMP::QuadModifier , IMP::QuadScore , IMP::Refiner , IMP::Restraint , IMP::ScoreState , IMP::SingletonModifier , IMP::SingletonScore , IMP::TripletModifier , IMP::TripletScore
• get_int() : IMP::core::MoverBase
• get_int_key() : IMP::core::MoverBase
• get_interacting_particles() : IMP::PairModifier , IMP::PairScore , IMP::QuadModifier , IMP::QuadScore , IMP::SingletonModifier , IMP::SingletonScore , IMP::TripletModifier , IMP::TripletScore
• get_interiors_intersect() : IMP::algebra::SphereD< D >
• get_internal() : IMP::core::Hierarchy
• get_internal_bonds() : IMP::atom::Bond
• get_internal_coordinates() : IMP::core::RigidMember
• get_intersection() : IMP::domino::JNode
• get_inv_rsigsq() : IMP::em::KernelParameters
• get_inv_sigsq() : IMP::em::RadiusDependentKernelParameters
• get_inverse() : IMP::algebra::Rotation2D , IMP::algebra::Rotation3D , IMP::algebra::Transformation2D
• get_is_above() : IMP::algebra::Plane3D
• get_is_active() : IMP::Particle
• get_is_below() : IMP::algebra::Plane3D
• get_is_changed() : IMP::PairScore , IMP::Particle , IMP::QuadScore , IMP::SingletonScore , IMP::TripletScore
• get_is_good_configuration() : IMP::Sampler
• get_is_incremental() : IMP::Restraint
• get_is_part_of_model() : IMP::Restraint
• get_is_valid() : IMP::atom::Hierarchy
• get_k() : IMP::core::Harmonic
• get_kdist() : IMP::em::RadiusDependentKernelParameters
• get_key_exists() : IMP::KeyBase< ID, LazyAdd >
• get_kinetic_energy() : IMP::atom::MolecularDynamics
• get_kinetic_temperature() : IMP::atom::MolecularDynamics
• get_leaves() : IMP::atom::Hierarchy , IMP::core::Hierarchy
• get_lim() : IMP::em::KernelParameters
• get_locations_string() : IMP::em::DensityMap
• get_mapped_state() : IMP::domino::MappedDiscreteSet
• get_mapped_state_val() : IMP::domino::MappedDiscreteSet
• get_mass() : IMP::atom::ElementTable
• get_max_distance() : IMP::saxs::Distribution< ValueT >
• get_max_q() : IMP::saxs::Profile
• get_max_value() : IMP::em::DensityMap
• get_mean() : IMP::core::Harmonic
• get_min_q() : IMP::saxs::Profile
• get_min_value() : IMP::em::DensityMap
• get_model() : IMP::Optimizer , IMP::Decorator , IMP::Particle , IMP::Restraint , IMP::ScoreState
• get_model_dens_map() : IMP::em::FitRestraint
• get_moved_singleton_container() : IMP::core::ClosePairsFinder
• get_mover() : IMP::core::MonteCarlo
• get_name() : IMP::core::HierarchyTraits , IMP::atom::ElementTable , IMP::example::ExampleDecorator
• get_nearest_neighbor() : IMP::algebra::NearestNeighborD< D >
• get_nearest_neighbors() : IMP::algebra::NearestNeighborD< D >
• get_next_residue() : IMP::atom::Residue
• get_node() : IMP::domino::RestraintGraph
• get_normfac() : IMP::em::RadiusDependentKernelParameters
• get_number_of_bonds() : IMP::atom::Bonded
• get_number_of_columns() : IMP::algebra::Matrix2D< T > , IMP::algebra::Matrix3D< T > , IMP::em::ImageHeader
• get_number_of_forward_steps() : IMP::core::MonteCarlo
• get_number_of_mapped_states() : IMP::domino::MappedDiscreteSet
• get_number_of_particle_pairs() : IMP::PairContainer
• get_number_of_particle_quads() : IMP::QuadContainer
• get_number_of_particle_triplets() : IMP::TripletContainer
• get_number_of_particles() : IMP::SingletonContainer
• get_number_of_refined() : IMP::Refiner
• get_number_of_rows() : IMP::algebra::Matrix2D< T > , IMP::algebra::Matrix3D< T > , IMP::em::ImageHeader
• get_number_of_slices() : IMP::algebra::Matrix3D< T > , IMP::em::ImageHeader
• get_number_of_upward_steps() : IMP::core::MonteCarlo
• get_number_of_voxels() : IMP::algebra::Grid3D< VT > , IMP::em::Volume< T >
• get_number_unique() : IMP::KeyBase< ID, LazyAdd >
• get_nx() : IMP::em::DensityHeader
• get_ny() : IMP::em::DensityHeader
• get_nz() : IMP::em::DensityHeader
• get_old_rot() : IMP::em::ImageHeader
• get_opposite() : IMP::algebra::Plane3D
• get_opt_combination() : IMP::domino::RestraintGraph
• get_optimizer() : IMP::core::Mover
• get_optimizer_state() : IMP::Optimizer
• get_origin() : IMP::em::DensityHeader
• get_orthogonal_vector() : IMP::algebra::VectorD< D >
• get_output_containers() : IMP::PairModifier , IMP::QuadModifier , IMP::SingletonModifier , IMP::TripletModifier
• get_output_objects() : IMP::Restraint
• get_output_particles() : IMP::ScoreState , IMP::SingletonModifier , IMP::PairModifier , IMP::QuadModifier , IMP::Restraint , IMP::TripletModifier
• get_pair_container() : IMP::container::PairsRestraint , IMP::container::PairContainerSet
• get_pair_filter() : IMP::container::ClosePairContainer , IMP::container::CloseBipartitePairContainer
• get_pair_score() : IMP::core::ConnectivityRestraint
• get_params() : IMP::em::KernelParameters
• get_parent() : IMP::core::Hierarchy , IMP::atom::Hierarchy
• get_parent_index() : IMP::core::Hierarchy
• get_particle() : IMP::Decorator , IMP::atom::Dihedral , IMP::atom::Angle
• get_particle_pairs() : IMP::misc::LogPairScore
• get_particles() : IMP::domino::RestraintGraph
• get_point() : IMP::example::ExampleTemplateClass< D > , IMP::algebra::Segment3D
• get_power_distance() : IMP::algebra::SphereD< D >
• get_prechange_particle() : IMP::Particle
• get_projection() : IMP::algebra::Plane3D
• get_quad_container() : IMP::container::QuadContainerSet , IMP::container::QuadsRestraint
• get_quaternion() : IMP::algebra::Rotation3D
• get_radius() : IMP::core::ClosePairsFinder , IMP::atom::ForceFieldParameters , IMP::algebra::Cone3D
• get_random_rotation_3d() : IMP::algebra::Rotation3D
• get_random_vector_in() : IMP::algebra::SphereD< D > , IMP::algebra::VectorD< D >
• get_random_vector_on() : IMP::algebra::SphereD< D > , IMP::algebra::VectorD< D >
• get_refined() : IMP::Refiner
• get_residue() : IMP::atom::Hierarchy , IMP::atom::CHARMMSegmentTopology , IMP::atom::Hierarchy
• get_resolution() : IMP::em::DensityHeader
• get_restraint() : IMP::Model , IMP::RestraintSet
• get_restraint_by_name() : IMP::restrainer::Restraint
• get_reversed() : IMP::em::ImageHeader
• get_rigid_body_by_id() : IMP::restrainer::Restraint
• get_rkdist() : IMP::em::KernelParameters
• get_rnormfac() : IMP::em::KernelParameters
• get_root() : IMP::atom::Hierarchy , IMP::core::Hierarchy
• get_root_imp_hierarchy() : IMP::restrainer::Representation
• get_rotated() : IMP::algebra::Rotation2D , IMP::algebra::Rotation3D
• get_rotated_one_coordinate() : IMP::algebra::Rotation3D
• get_rotation() : IMP::algebra::Transformation2D
• get_rotation_about_point() : IMP::algebra::Transformation2D , IMP::algebra::Transformation3D
• get_rotation_from_fixed_xyz() : IMP::algebra::FixedXYZ
• get_rotation_from_fixed_zxz() : IMP::algebra::Rotation3D
• get_rotation_from_fixed_zyz() : IMP::algebra::FixedZYZ
• get_rotation_from_matrix() : IMP::algebra::Rotation3D
• get_rotation_from_vector4d() : IMP::algebra::Rotation3D
• get_rotation_in_radians_about_axis() : IMP::algebra::Rotation3D
• get_rotation_taking_first_to_second() : IMP::algebra::Rotation3D
• get_rotational_derivatives() : IMP::core::RigidBody
• get_rsig() : IMP::em::KernelParameters
• get_rsigsq() : IMP::em::KernelParameters
• get_score() : IMP::domino::JNode
• get_score_state() : IMP::Model
• get_segment() : IMP::atom::CHARMMTopology
• get_shortest_segment() : IMP::algebra::VectorD< D >
• get_sig() : IMP::em::RadiusDependentKernelParameters
• get_singleton_container() : IMP::container::SingletonsRestraint , IMP::container::SingletonContainerSet
• get_size() : IMP::algebra::MultiArray< T, D >
• get_solvent_accessibility() : IMP::saxs::SolventAccessibleSurface
• get_space() : IMP::domino::DiscreteSampler
• get_spacing() : IMP::em::DensityHeader , IMP::em::DensityMap
• get_sphere() : IMP::core::XYZR
• get_sq2pi3() : IMP::em::KernelParameters
• get_squared_distance() : IMP::algebra::VectorD< D >
• get_start() : IMP::algebra::MultiArray< T, D >
• get_stream() : IMP::display::Writer
• get_stream_is_open() : IMP::display::Writer
• get_string() : IMP::KeyBase< ID, LazyAdd >
• get_timessig() : IMP::em::KernelParameters
• get_tip() : IMP::algebra::Cone3D
• get_tmp_file_name() : IMP::test::TestCase
• get_top() : IMP::em::DensityHeader
• get_traits() : IMP::atom::Hierarchy
• get_transformation() : IMP::domino::Transformation , IMP::core::RigidBody
• get_transformation_aligning_first_to_second() : IMP::algebra::Transformation3D
• get_transformation_from_reference_frame() : IMP::algebra::Transformation3D
• get_transformed() : IMP::algebra::Transformation2D , IMP::algebra::Transformation3D , IMP::em::DensityMap
• get_translation() : IMP::algebra::Transformation2D
• get_triplet_container() : IMP::container::TripletsRestraint , IMP::container::TripletContainerSet
• get_type_name() : IMP::Object
• get_uniform_surface_cover() : IMP::algebra::Cylinder3D , IMP::algebra::SphereD< D > , IMP::algebra::VectorD< D >
• get_unit_cell() : IMP::algebra::Grid3D< VT >
• get_value() : IMP::em::DensityMap
• get_vector_product() : IMP::algebra::VectorD< D >
• get_vector_to() : IMP::core::XYZ
• get_version_info() : IMP::Optimizer , IMP::Refiner , IMP::Object
• get_vsig() : IMP::em::RadiusDependentKernelParameters
• get_vsigsq() : IMP::em::RadiusDependentKernelParameters
• get_x_loc() : IMP::em::DensityMap
• get_xorigin() : IMP::em::DensityHeader
• get_xyz_keys() : IMP::core::XYZ
• get_y_loc() : IMP::em::DensityMap
• get_yorigin() : IMP::em::DensityHeader
• get_z_loc() : IMP::em::DensityMap
• get_zorigin() : IMP::em::DensityHeader
• Grid3D() : IMP::algebra::Grid3D< VT >
• GridRangeD() : IMP::algebra::GridRangeD< D >