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• accept_move() : IMP::core::Mover
• add() : IMP::em::DensityMap , IMP::saxs::Profile , IMP::saxs::RadialDistributionFunction
• add_alias() : IMP::KeyBase< ID, LazyAdd >
• add_atom_type() : IMP::atom::AtomType
• add_atom_types() : IMP::atom::CHARMMTopology
• add_bonds() : IMP::atom::ForceFieldParameters , IMP::atom::CHARMMTopology , IMP::atom::ForceFieldParameters
• add_charges() : IMP::atom::CHARMMTopology
• add_child() : IMP::atom::Hierarchy
• add_child_at() : IMP::atom::Hierarchy
• add_edge() : IMP::domino::RestraintGraph
• add_entry() : IMP::saxs::Profile
• add_errors() : IMP::saxs::Profile
• add_failure_handler() : IMP::FailureHandler
• add_float_key() : IMP::core::MoverBase
• add_float_keys() : IMP::core::MoverBase
• add_impropers() : IMP::atom::CHARMMTopology
• add_int_key() : IMP::core::MoverBase
• add_int_keys() : IMP::core::MoverBase
• add_jt_edge() : IMP::domino::DominoOptimizer
• add_jt_node() : IMP::domino::DominoOptimizer
• add_mapped_state() : IMP::domino::MappedDiscreteSet
• add_member() : IMP::core::RigidBody
• add_mover() : IMP::core::MonteCarlo
• add_movers() : IMP::core::MonteCarlo
• add_node() : IMP::domino::RestraintGraph
• add_optimizer_state() : IMP::Optimizer
• add_optimizer_states() : IMP::Optimizer
• add_pair_container() : IMP::container::PairContainerSet
• add_pair_containers() : IMP::container::PairContainerSet
• add_pair_filter() : IMP::container::CloseBipartitePairContainer , IMP::container::ClosePairContainer
• add_pair_filters() : IMP::container::CloseBipartitePairContainer , IMP::container::ClosePairContainer
• add_partial_profiles() : IMP::saxs::Profile
• add_particle() : IMP::core::TableRefiner
• add_quad_container() : IMP::container::QuadContainerSet
• add_quad_containers() : IMP::container::QuadContainerSet
• add_radii() : IMP::atom::ForceFieldParameters
• add_residue() : IMP::atom::CHARMMSegmentTopology
• add_residues() : IMP::atom::CHARMMSegmentTopology
• add_restraint() : IMP::Model , IMP::RestraintSet , IMP::domino::DominoOptimizer
• add_restraint_recursive() : IMP::domino::DominoOptimizer
• add_restraints() : IMP::Model , IMP::RestraintSet
• add_score_state() : IMP::Model
• add_score_states() : IMP::Model
• add_segment() : IMP::atom::CHARMMTopology
• add_segments() : IMP::atom::CHARMMTopology
• add_singleton_container() : IMP::container::SingletonContainerSet
• add_singleton_containers() : IMP::container::SingletonContainerSet
• add_term() : IMP::modeller::MultipleBinormalRestraint
• add_to_derivative() : IMP::core::XYZ
• add_to_derivatives() : IMP::core::XYZ
• add_to_representation() : IMP::restrainer::Restraint
• add_triplet_container() : IMP::container::TripletContainerSet
• add_triplet_containers() : IMP::container::TripletContainerSet
• add_well_depths() : IMP::atom::ForceFieldParameters
• adjust_header() : IMP::em::Image< T > , IMP::em::Volume< T >
• AllPairContainer() : IMP::container::AllPairContainer
• analyse() : IMP::domino::RestraintGraph
• AngleRestraint() : IMP::core::AngleRestraint
• AngleSingletonScore() : IMP::atom::AngleSingletonScore
• AngleTripletScore() : IMP::core::AngleTripletScore
• apply() : IMP::TripletModifier , IMP::SingletonModifier , IMP::PairModifier , IMP::SingletonModifier , IMP::QuadContainer , IMP::PairContainer , IMP::QuadContainer , IMP::TripletModifier , IMP::SingletonContainer , IMP::PairContainer , IMP::TripletContainer , IMP::PairModifier , IMP::TripletContainer , IMP::SingletonModifier , IMP::QuadModifier , IMP::em::FilterByThreshold< T, D > , IMP::QuadModifier , IMP::TripletModifier , IMP::SingletonContainer , IMP::atom::CHARMMPatch , IMP::QuadModifier , IMP::atom::CHARMMPatch
• apply_default_patches() : IMP::atom::CHARMMTopology , IMP::atom::CHARMMSegmentTopology
• assert_number() : IMP::test::DirectorObjectChecker
• assertInTolerance() : IMP::test::TestCase
• assertPlural() : IMP::test::TestCase
• assertShow() : IMP::test::TestCase
• assertXYZDerivativesInTolerance() : IMP::test::TestCase
• assign_velocities() : IMP::atom::MolecularDynamics
• AttributeSingletonScore() : IMP::core::AttributeSingletonScore