1 Factory Index {#factory_index}
6 Functions that create objects of a given type:
8 See also [Argument Index](@ref argument_index), [Class Examples](@ref class_example_index), [Function Examples](@ref function_example_index)
9 # IMP (kernel) # {#factory_index_kernel}
11 <th>Class</th><th>Factories</th></tr>
12 <tr><td>@ref
IMP::AdvancedFlag</td><td><a href=
"classIMP_1_1AdvancedFlag.html#ac0d94f9da4199a977bf2fd252dd07c96">IMP::AdvancedFlag::operator=()</a></td></tr>
14 <tr><td>@ref
IMP::ConfigurationSet</td><td><a href=
"classIMP_1_1Sampler.html#a9843aae8ed03575f4dd0711c630b8989">IMP::Sampler::create_sample()</a>, <a href=
"classIMP_1_1Sampler.html#affb28d22d703c4bae56ae21ca0a338b1">IMP::Sampler::do_sample()</a>, <a href=
"classIMP_1_1core_1_1MCCGSampler.html#a868b0f8beccf3619a87e9ea356147009">IMP::core::MCCGSampler::do_sample()</a>, <a href=
"classIMP_1_1core_1_1MCCGSampler.html#a3c2641088f310a8d9ea56e875209454a">IMP::core::MCCGSampler::get_rejected_configurations()</a>, <a href=
"classIMP_1_1domino_1_1DiscreteSampler.html#a9c74cbd05ff9bbc1d45ee28f45c053ed">IMP::domino::DiscreteSampler::do_sample()</a>, <a href=
"classIMP_1_1kinematics_1_1RRT.html#a6cc666b477e1326e7e1fe4fa157abf20">IMP::kinematics::RRT::do_sample()</a></td></tr>
15 <tr><td>@ref
IMP::Constraint</td><td><a href=
"classIMP_1_1atom_1_1CenterOfMass.html#a3d4a0d52dd4a6430c7ca70b76236cbd7">IMP::atom::CenterOfMass::get_constraint()</a>, <a href=
"classIMP_1_1core_1_1Centroid.html#ae00729aa7256523a7ae601d1b04d59b1">IMP::core::Centroid::get_constraint()</a>, <a href=
"classIMP_1_1core_1_1Cover.html#acbba65724f3b5cc5ccba6230030bb5a7">IMP::core::Cover::get_constraint()</a></td></tr>
16 <tr><td>@ref
IMP::DerivativeAccumulator</td><td><a href=
"classIMP_1_1ScoreAccumulator.html#aa7fc7bf106ff7b6e425a6654d8e045f8">IMP::ScoreAccumulator::get_derivative_accumulator()</a></td></tr>
17 <tr><td>@ref
IMP::Flag</td><td><a href=
"classIMP_1_1Flag.html#ade738dcb229586691745bb7208a371ef">IMP::Flag::operator=()</a></td></tr>
18 <tr><td>@ref
IMP::Key</td><td><a href=
"classIMP_1_1Key.html#a498f62feed4576505d100d5fec663178">IMP::Key::operator+()</a>, <a href=
"classIMP_1_1Key.html#a99ee2d411e6951df306fd2500d88f4ec">
IMP::Key::operator++()</a>, <a href=
"classIMP_1_1Key.html#ad6cf0753162983e183e4224a76009769">IMP::Key::operator--()</a>, <a href=
"classIMP_1_1Key.html#af693f942a3d828618581b1d99eed633b">
IMP::Key::add_alias()</a>, <a href=
"classIMP_1_1misc_1_1CustomXYZR.html#abf684f0db593d848979dc60276e353ee">IMP::misc::CustomXYZR::get_decorator_traits()</a>, <a href=
"classIMP_1_1misc_1_1CustomXYZR.html#a57fd04d203ea022563739fccb3e008e6">IMP::misc::CustomXYZR::get_default_decorator_traits()</a></td></tr>
19 <tr><td>@ref
IMP::Model</td><td><a href=
"classIMP_1_1ConfigurationSet.html#a155235875a1e68158d49267acaef681b">IMP::ConfigurationSet::get_model()</a>, <a href=
"classIMP_1_1Decorator.html#a553058bfcf00d1e5de7aff0a99cc3bc5">
IMP::Decorator::get_model()</a>, <a href=
"classIMP_1_1ModelObject.html#a93ea856693a96d8e4bb44685349395de">IMP::ModelObject::get_model()</a>, <a href=
"classIMP_1_1ParticleAdaptor.html#a6ccf121171f772b15f1cb295924d2c04">IMP::ParticleAdaptor::get_model()</a>, <a href=
"classIMP_1_1Sampler.html#a898dc79ade27f53ca100107136122cc3">IMP::Sampler::get_model()</a>, <a href=
"classIMP_1_1domino_1_1Subset.html#a4d8bbcfc51013721e4d17765edcfef60">IMP::domino::Subset::get_model()</a>, <a href=
"classIMP_1_1multifit_1_1ProteomicsEMAlignmentAtomic.html#a9d7c6b4b61ff4952e0dcbc6a6ee91279">IMP::multifit::ProteomicsEMAlignmentAtomic::get_model()</a>, <a href=
"classIMP_1_1npctransport_1_1ParticleFactory.html#a8e321c944e1b03398671c0865e83f6a8">
IMP::npctransport::ParticleFactory::get_model()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#aa7840b767cfdce2e6f371dcdf5b9b0d4">
IMP::npctransport::Scoring::get_model()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#aae01932be6be7ea5e905ae7f301868d2">
IMP::npctransport::Scoring::get_model()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#abf6532308bb2217d53e031e0dc76a0a6">IMP::npctransport::SimulationData::get_model()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#a093070f639adfcb5ef74b42713067817">IMP::npctransport::SimulationData::get_model()</a>, <a href=
"classIMP_1_1npctransport_1_1Statistics.html#a077ec2a3a6334249ec7aa5e1572f62ff">
IMP::npctransport::Statistics::get_model()</a>, <a href=
"classIMP_1_1npctransport_1_1Statistics.html#a9499acc5b2a6dcc6efb19bd693955855">
IMP::npctransport::Statistics::get_model()</a></td></tr>
21 <tr><td>@ref
IMP::Optimizer</td><td><a href=
"classIMP_1_1OptimizerState.html#ac601ca928b88a1828dfbc3288f7300a6">IMP::OptimizerState::get_optimizer()</a>, <a href=
"classIMP_1_1core_1_1MonteCarloWithLocalOptimization.html#ae53418c0e3fc6d230233d6ac3eac0917">IMP::core::MonteCarloWithLocalOptimization::get_local_optimizer()</a></td></tr>
22 <tr><td>@ref
IMP::OptimizerState</td><td><a href=
"classIMP_1_1Optimizer.html#a6a64aef807c00416188924b7e4af2f7d">IMP::Optimizer::get_optimizer_state()</a>, <a href=
"classIMP_1_1core_1_1MCCGSampler.html#aad24ef9b8f969b2603c4602712bce831">IMP::core::MCCGSampler::get_optimizer_state()</a></td></tr>
23 <tr><td>@ref
IMP::PairContainer</td><td><a href=
"classIMP_1_1container_1_1PairContainerSet.html#ae343941d5a5f5e1b547bead72eee531c">IMP::container::PairContainerSet::get_pair_container()</a>, <a href=
"classIMP_1_1display_1_1PairsGeometry.html#ac743a4c3064830a62e521e029c55a78e">IMP::display::PairsGeometry::get_container()</a>, <a href=
"classIMP_1_1misc_1_1DecayPairContainerOptimizerState.html#ac20026831c9aff9573601adbd41dba6f">IMP::misc::DecayPairContainerOptimizerState::get_output_container()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#a4e4f841b03e335318b0617e5cf5a1b5b">
IMP::npctransport::Scoring::create_close_beads_container()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#aedd0b42cf991b9980138d60ee29a7838">
IMP::npctransport::Scoring::create_close_beads_container()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#aa8442a8627971126904de6b8622f8435">
IMP::npctransport::Scoring::get_close_beads_container()</a></td></tr>
24 <tr><td>@ref
IMP::PairPredicate</td><td><a href=
"classIMP_1_1container_1_1CloseBipartitePairContainer.html#a61e9b66e1775997dbde246a6be83a059">IMP::container::CloseBipartitePairContainer::get_pair_filter()</a>, <a href=
"classIMP_1_1container_1_1ClosePairContainer.html#a1425b187f76d11ec599f14310c3dae41">IMP::container::ClosePairContainer::get_pair_filter()</a>, <a href=
"classIMP_1_1core_1_1ClosePairsFinder.html#a6e954feff41233daa12a4aa6d3783008">IMP::core::ClosePairsFinder::get_pair_filter()</a>, <a href=
"classIMP_1_1core_1_1ExcludedVolumeRestraint.html#a10843c7ebf6a7886e2764dbb2fa4279b">IMP::core::ExcludedVolumeRestraint::get_pair_filter()</a></td></tr>
26 <tr><td>@ref
IMP::Particle</td><td><a href=
"classIMP_1_1Decorator.html#ad1accb02f8c3be95582c0a6021c61fcb">
IMP::Decorator::get_particle()</a>, <a href=
"classIMP_1_1Decorator.html#ad2907c239b46cf65dab071a14b27b115">IMP::Decorator::operator->()</a>, <a href=
"classIMP_1_1Model.html#a5557ecdab824617aab45889f5258a1df">
IMP::Model::get_particle()</a>, <a href=
"classIMP_1_1Refiner.html#aee8d61be106d561f9be0e7ace3bbef34">
IMP::Refiner::get_refined()</a>, <a href=
"classIMP_1_1atom_1_1Angle.html#a5f3bb0b13aa7dd63d2ec82691394a725">IMP::atom::Angle::get_particle()</a>, <a href=
"classIMP_1_1atom_1_1Angle.html#a2764b1dbd93398f3df9330a01bf83057">IMP::atom::Angle::get_particle()</a>, <a href=
"classIMP_1_1atom_1_1Dihedral.html#a4a1e3bd4480803221e3e4de4966afdc5">IMP::atom::Dihedral::get_particle()</a>, <a href=
"classIMP_1_1atom_1_1Dihedral.html#a67118254e85dc8d4e78447fac259516e">IMP::atom::Dihedral::get_particle()</a>, <a href=
"classIMP_1_1atom_1_1SecondaryStructureResidue.html#ae1f85afa673bbb46990162ef4bb9614a">IMP::atom::SecondaryStructureResidue::get_particle()</a>, <a href=
"classIMP_1_1atom_1_1Simulator.html#a5f8dc26a3c63e2b521d705bb2747aefa">IMP::atom::Simulator::get_particle()</a>, <a href=
"classIMP_1_1core_1_1DirectionAngle.html#a12550055e316228476033a05aa042037">
IMP::core::DirectionAngle::get_particle()</a>, <a href=
"classIMP_1_1core_1_1DirectionAngle.html#a5d08f0b235c346a78b4556a0be0cd7b2">
IMP::core::DirectionAngle::get_particle()</a>, <a href=
"classIMP_1_1core_1_1Reference.html#a47b4077482ebea6db7717e5a301794b9">IMP::core::Reference::get_reference_particle()</a>, <a href=
"classIMP_1_1display_1_1SingletonGeometry.html#ada39b5b10776bd8ec103f0c20b046435">IMP::display::SingletonGeometry::get_particle()</a>, <a href=
"classIMP_1_1em_1_1DensityFillingRestraint.html#ad7f1dd04891d72c5d27a5439a3cb7297">IMP::em::DensityFillingRestraint::get_particle()</a>, <a href=
"classIMP_1_1em_1_1EnvelopePenetrationRestraint.html#a4f6f4bc25647efaa28938fa88b39499d">IMP::em::EnvelopePenetrationRestraint::get_particle()</a>, <a href=
"classIMP_1_1em_1_1FitRestraint.html#a3a18b0d9d5c087a618fad597196cfdc8">IMP::em::FitRestraint::get_particle()</a>, <a href=
"classIMP_1_1em_1_1PCAFitRestraint.html#a9ce836e6cc025607663c7c48418cc8f2">IMP::em::PCAFitRestraint::get_particle()</a>, <a href=
"classIMP_1_1kinematics_1_1KinematicForest.html#ac5f968f9f21a40d3b97b587752d90242">IMP::kinematics::KinematicForest::get_parent()</a>, <a href=
"classIMP_1_1multifit_1_1RadiusOfGyrationRestraint.html#afb2e30a4fedd196e99c3302cae8a5961">IMP::multifit::RadiusOfGyrationRestraint::get_particle()</a>, <a href=
"classIMP_1_1multifit_1_1WeightedExcludedVolumeRestraint.html#acda9c29315d608a8510ddbce9b7b55af">IMP::multifit::WeightedExcludedVolumeRestraint::get_particle()</a>, <a href=
"classIMP_1_1npctransport_1_1BodyStatisticsOptimizerState.html#a872aba8024efc9cea8332dddd7b42aee">IMP::npctransport::BodyStatisticsOptimizerState::get_particle()</a>, <a href=
"classIMP_1_1npctransport_1_1FGChain.html#abda53276ceea983c5c307d0604bceba2">
IMP::npctransport::FGChain::get_bead()</a>, <a href=
"classIMP_1_1npctransport_1_1ParticleFactory.html#a918d7c02c32576f81616813a145fcb41">
IMP::npctransport::ParticleFactory::create()</a>, <a href=
"classIMP_1_1npctransport_1_1ParticleTransportStatisticsOptimizerState.html#a974986244418fba151d5faaa3d45b4e5">IMP::npctransport::ParticleTransportStatisticsOptimizerState::get_particle()</a>, <a href=
"classIMP_1_1npctransport_1_1RelaxingSpring.html#ae9bc619a157e41acd2cdd17c5eebc63e">IMP::npctransport::RelaxingSpring::get_bonded_particle_0()</a>, <a href=
"classIMP_1_1npctransport_1_1RelaxingSpring.html#a5792a22459f17669e5ead13e779b2439">IMP::npctransport::RelaxingSpring::get_bonded_particle_1()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#a6b6b9d4f83a9ae230edca68779a9747a">
IMP::npctransport::SimulationData::get_slab_particle()</a>, <a href=
"classIMP_1_1rmf_1_1HierarchyLoadLink.html#abd08688da275b313003dfccdc9bc0ad1">IMP::rmf::HierarchyLoadLink::do_create()</a>, <a href=
"namespaceIMP_1_1spb.html#ae1bbb466a333fd88c5c6307d628165b9">IMP::spb::add_ISD_particles()</a></td></tr>
27 <tr><td>@ref
IMP::QuadContainer</td><td><a href=
"classIMP_1_1container_1_1QuadContainerSet.html#acba780ec6cd198930851e9bf829d8802">IMP::container::QuadContainerSet::get_quad_container()</a></td></tr>
28 <tr><td>@ref
IMP::QuadScore</td><td><a href=
"classIMP_1_1container_1_1PredicateQuadsRestraint.html#a1f4e366d4876bb506c5b70190b618641">IMP::container::PredicateQuadsRestraint::get_score_for_predicate()</a></td></tr>
29 <tr><td>@ref
IMP::Restraint</td><td><a href=
"classIMP_1_1Model.html#a65e544e1ddfbb7eb08f009d2375afc45">IMP::Model::get_dependent_restraints()</a>, <a href=
"classIMP_1_1Restraint.html#a884c8cc8b6fb790f8b0f057958f4d4ee">
IMP::Restraint::create_current_decomposition()</a>, <a href=
"classIMP_1_1Restraint.html#ae21bbd0c803b1ea05fc04d0aa6a6c200">
IMP::Restraint::create_decomposition()</a>, <a href=
"classIMP_1_1RestraintSet.html#aef5d095584b22674ea4f6cfef714ef37">IMP::RestraintSet::get_restraint()</a>, <a href=
"classIMP_1_1RestraintsAdaptor.html#a4480138e5bbff398b8f3bc2aeb516b22">IMP::RestraintsAdaptor::get()</a>, <a href=
"classIMP_1_1core_1_1MinimumRestraint.html#a208f37e990ceb4d47b80df8a74b7e512">IMP::core::MinimumRestraint::get_restraint()</a>, <a href=
"classIMP_1_1display_1_1RestraintGeometry.html#adadb9d6eda2e6ed7ebdfafa0c538756e">IMP::display::RestraintGeometry::get_restraint()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#ad8e7271031722c22a033e31afd7a4094">
IMP::npctransport::Scoring::create_backbone_restraint()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#a5af15fec4f0f1153c0a5d8c9042a3536">
IMP::npctransport::Scoring::create_bounding_volume_restraint()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#a9e946acc8b600f31d8c01edf59534dd7">
IMP::npctransport::Scoring::create_slab_restraint()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#a871ed833b15dcb500c7e8e733e709be5">
IMP::npctransport::Scoring::create_z_bias_restraint()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#a1f680b9c0df4420c40174fd40819e169">
IMP::npctransport::Scoring::get_bounding_volume_restraint()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#adbf1ec70afa9a6cb717ccfe65e110329">IMP::npctransport::Scoring::get_pore_radius_restraint()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#aa04e72cc5132af0ace408ff0687a8810">
IMP::npctransport::Scoring::get_slab_restraint()</a>, <a href=
"namespaceIMP_1_1atom.html#adb6ec371e048f639a51292a67268f432">
IMP::atom::create_connectivity_restraint()</a>, <a href=
"namespaceIMP_1_1atom.html#a76ad13aa02ece8e2a110250b4be878b7">
IMP::atom::create_connectivity_restraint()</a>, <a href=
"namespaceIMP_1_1atom.html#abc59e05e0e702438730b01f225858438">
IMP::atom::create_distance_restraint()</a>, <a href=
"namespaceIMP_1_1atom.html#a64f18ad8ce0534736253b21f84c7c308">
IMP::atom::create_excluded_volume_restraint()</a>, <a href=
"namespaceIMP_1_1atom.html#af115fdd772a04d5e4f775825a56b61d9">
IMP::atom::create_excluded_volume_restraint()</a>, <a href=
"namespaceIMP_1_1atom.html#a2e83759163a5032a2f429eae3e86f0cd">
IMP::atom::create_internal_connectivity_restraint()</a>, <a href=
"namespaceIMP_1_1atom.html#aced8686a48e1011e90376a302cc3155d">
IMP::atom::create_internal_connectivity_restraint()</a>, <a href=
"namespaceIMP_1_1example.html#a9aa2ea9cadf531860b3041ded1973637">
IMP::example::create_chain_restraint()</a>, <a href=
"namespaceIMP_1_1example.html#a3664740d13bae6e46e99912a842c5160">
IMP::example::create_excluded_volume()</a>, <a href=
"namespaceIMP_1_1multifit.html#a8273d850c0ab1cd53983c9f169af3cd6">
IMP::multifit::create_weighted_excluded_volume_restraint()</a></td></tr>
30 <tr><td>@ref
IMP::RestraintInfo</td><td><a href=
"classIMP_1_1Restraint.html#a38bbb37b0e8dc92785b1834233f577c6">
IMP::Restraint::get_dynamic_info()</a>, <a href=
"classIMP_1_1Restraint.html#af07a7d34ad419288411fd39b97cfd2b2">
IMP::Restraint::get_static_info()</a>, <a href=
"classIMP_1_1bayesianem_1_1GaussianEMRestraint.html#ac1a96bac4a027ac7688b231e32c94499">
IMP::bayesianem::GaussianEMRestraint::get_dynamic_info()</a>, <a href=
"classIMP_1_1bayesianem_1_1GaussianEMRestraint.html#add274757d3abe5afbfeaabce09c6db62">
IMP::bayesianem::GaussianEMRestraint::get_static_info()</a>, <a href=
"classIMP_1_1em2d_1_1PCAFitRestraint.html#ade85c576ee43d516a25253475fd44a92">
IMP::em2d::PCAFitRestraint::get_dynamic_info()</a>, <a href=
"classIMP_1_1em2d_1_1PCAFitRestraint.html#a75d851aaa395ef160729125386e166fe">
IMP::em2d::PCAFitRestraint::get_static_info()</a>, <a href=
"classIMP_1_1isd_1_1GaussianEMRestraint.html#a5fe7ea0f30d127888c8bd40841e32bc9">
IMP::isd::GaussianEMRestraint::get_dynamic_info()</a>, <a href=
"classIMP_1_1isd_1_1GaussianEMRestraint.html#a20de1d8b28ec1ab2e992237678b346f2">
IMP::isd::GaussianEMRestraint::get_static_info()</a>, <a href=
"classIMP_1_1isd_1_1UniformPrior.html#ada1153b6096d88f8eeca065003460544">
IMP::isd::UniformPrior::get_dynamic_info()</a>, <a href=
"classIMP_1_1isd_1_1UniformPrior.html#a3ccea3ad51c8420f2eed12fc39942101">
IMP::isd::UniformPrior::get_static_info()</a>, <a href=
"classIMP_1_1saxs_1_1Restraint.html#ad0c445182f0b7d1a5ce9605a5e1ab697">
IMP::saxs::Restraint::get_static_info()</a></td></tr>
32 <tr><td>@ref
IMP::ScoreAccumulator</td><td><a href=
"classIMP_1_1ScoringFunction.html#a841e932d67b3ee8e33cf968068036658">IMP::ScoringFunction::get_score_accumulator()</a>, <a href=
"classIMP_1_1ScoringFunction.html#a06398684dc918020b96cbe064413bf02">IMP::ScoringFunction::get_score_accumulator_if_below()</a>, <a href=
"classIMP_1_1ScoringFunction.html#ad1b2d5d08138c74a31baa27992eed403">IMP::ScoringFunction::get_score_accumulator_if_good()</a></td></tr>
33 <tr><td>@ref
IMP::ScoreState</td><td><a href=
"classIMP_1_1Model.html#a4cc23d80a0df9baa1163f8d3f961b1d0">IMP::Model::get_score_state()</a></td></tr>
34 <tr><td>@ref
IMP::ScoringFunction</td><td><a href=
"classIMP_1_1Optimizer.html#a6be2b10dcfb0be4616a54ac32ece8a67">
IMP::Optimizer::get_scoring_function()</a>, <a href=
"classIMP_1_1Restraint.html#a2bf725ecf399f8fe8ab65980e0386f00">
IMP::Restraint::create_scoring_function()</a>, <a href=
"classIMP_1_1Restraint.html#a4b9095c8c23e1d3b631cb7af90353a02">IMP::Restraint::create_internal_scoring_function()</a>, <a href=
"classIMP_1_1Sampler.html#a15adf816246a121950892cbc957f0681">
IMP::Sampler::get_scoring_function()</a>, <a href=
"classIMP_1_1ScoringFunctionAdaptor.html#aad09f1973c5383ea3d1d0430910beeb6">IMP::ScoringFunctionAdaptor::get()</a>, <a href=
"classIMP_1_1ScoringFunctionAdaptor.html#a7b5d074185fc11c9e19a4c1b2445f795">IMP::ScoringFunctionAdaptor::get()</a>, <a href=
"classIMP_1_1ScoringFunctionAdaptor.html#acc7e332f6cadb42dbab6a698270876e3">IMP::ScoringFunctionAdaptor::get()</a>, <a href=
"classIMP_1_1ScoringFunctionAdaptor.html#a8703032ecda559760ce1c4a8c2a8c1e3">IMP::ScoringFunctionAdaptor::get()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#aae1d68d893a9cc874ae24552a5a24540">
IMP::npctransport::Scoring::get_custom_scoring_function()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#adb5e855a526b1a707bcb0ba40ffbd9bb">
IMP::npctransport::Scoring::get_custom_scoring_function()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#ae64c9d924a678c15cfdb9b940fb1ad82">
IMP::npctransport::Scoring::get_scoring_function()</a></td></tr>
35 <tr><td>@ref
IMP::SingletonContainer</td><td><a href=
"classIMP_1_1container_1_1SingletonContainerSet.html#a808361141dbec1c0ea1231dfa1ef36c9">IMP::container::SingletonContainerSet::get_singleton_container()</a>, <a href=
"classIMP_1_1display_1_1SingletonsGeometry.html#a641a621f321c7e664f368b49a9371063">IMP::display::SingletonsGeometry::get_container()</a></td></tr>
36 <tr><td>@ref
IMP::SingletonScore</td><td><a href=
"classIMP_1_1container_1_1PredicateSingletonsRestraint.html#a30bc2d7d996e33863d2ff8abef6b52e6">IMP::container::PredicateSingletonsRestraint::get_score_for_predicate()</a></td></tr>
37 <tr><td>@ref
IMP::TextOutput</td><td><a href=
"namespaceIMP.html#ab80a40f6e42e620a158a956ec33acb68">
IMP::create_temporary_file()</a>, <a href=
"namespaceIMP.html#a8187645ef8e14666eefada67c6cd317f">IMP::get_log_target()</a></td></tr>
38 <tr><td>@ref
IMP::TripletContainer</td><td><a href=
"classIMP_1_1container_1_1TripletContainerSet.html#aec704f8ab29206b4bccff59800ed1a7b">IMP::container::TripletContainerSet::get_triplet_container()</a></td></tr>
39 <tr><td>@ref
IMP::TripletScore</td><td><a href=
"classIMP_1_1container_1_1PredicateTripletsRestraint.html#af745b55e98b3cecb3c4c811955f9cab1">IMP::container::PredicateTripletsRestraint::get_score_for_predicate()</a></td></tr>
41 <tr><td>@ref
IMP::Value</td><td><a href=
"classIMP_1_1algebra_1_1GridD.html#a6ed148a6870b552c9a0ece4fbade160f">IMP::algebra::GridD::at()</a>, <a href=
"classIMP_1_1algebra_1_1GridD.html#adb7e2e9c0cb96a26c31683ac51541273">IMP::algebra::GridD::at()</a>, <a href=
"classIMP_1_1algebra_1_1GridD.html#a4253e432b3e29c9717dec9cdc29ba314">IMP::algebra::GridD::operator[]()</a>, <a href=
"classIMP_1_1algebra_1_1GridD.html#adf5b3de175047e40a340c7acdb47b7d9">IMP::algebra::GridD::operator[]()</a></td></tr>
42 <tr><td>@ref
IMP::Vector</td><td><a href=
"classIMP_1_1ConstVector.html#aea5e00cd3a596d70b5e5691c23f1d487">IMP::ConstVector::ConstVector()</a>, <a href=
"classIMP_1_1Container.html#a3c1564f6fe55ed0bbb9e0d7ca2d41abe">
IMP::Container::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1Key.html#a0f163e7862cfb282d4a29fe2cbee3b89">
IMP::Key::get_all_strings()</a>, <a href=
"classIMP_1_1LRUCache.html#a376fc0f05d785e74b937fe6991aee7a1">IMP::LRUCache::get_keys()</a>, <a href=
"classIMP_1_1Model.html#af7c7e0c0efb8c8bd3cd425ef1528eb54">
IMP::Model::get_particle_indexes()</a>, <a href=
"classIMP_1_1ModelObject.html#ad36883c4a980f5d8f0fe1dd512f2d46e">
IMP::ModelObject::get_interactions()</a>, <a href=
"classIMP_1_1ModelObject.html#a119f13183a7a4f2e79c3bbd719329486">
IMP::ModelObject::do_get_interactions()</a>, <a href=
"classIMP_1_1Refiner.html#a5472c3ed2b59a73d39ca58fba0aad9d9">
IMP::Refiner::get_refined()</a>, <a href=
"classIMP_1_1Refiner.html#a93aea26b1bfc67c1b704fd25df6ba3da">
IMP::Refiner::get_refined_indexes()</a>, <a href=
"classIMP_1_1Refiner.html#aa56cac7a4534bc17640ca939e4e8fcee">
IMP::Refiner::get_refined_indexes_by_ref()</a>, <a href=
"classIMP_1_1RestraintInfo.html#a80e65ed136d91ca7fd2d95b315793696">
IMP::RestraintInfo::get_particle_indexes_value()</a>, <a href=
"classIMP_1_1SingletonContainer.html#ac939d4895b35849464f750c855a41195">IMP::SingletonContainer::get_contents()</a>, <a href=
"classIMP_1_1SingletonContainer.html#a0f805ae830a2b77dc47d2528822a0308">
IMP::SingletonContainer::get_indexes()</a>, <a href=
"classIMP_1_1SingletonContainer.html#aeebe47b7201a29319f0a522c33f6d738">
IMP::SingletonContainer::get_range_indexes()</a>, <a href=
"classIMP_1_1algebra_1_1BoundedGridRangeD.html#a7a7bb6e98f48c2153626ad288340363f">IMP::algebra::BoundedGridRangeD::get_all_indexes()</a>, <a href=
"classIMP_1_1algebra_1_1BoundedGridRangeD.html#abfd54359550894c029defa77ead61ab8">IMP::algebra::BoundedGridRangeD::get_indexes()</a>, <a href=
"classIMP_1_1algebra_1_1BoundedGridRangeD.html#a737ab039ddae4cf86fe92044c15424e6">IMP::algebra::BoundedGridRangeD::get_extended_indexes()</a>, <a href=
"classIMP_1_1algebra_1_1DenseGridStorageD.html#a6ddabec5b4d956d7de1dd36eac335462">IMP::algebra::DenseGridStorageD::get_all_voxels()</a>, <a href=
"classIMP_1_1algebra_1_1PrincipalComponentAnalysisD.html#a0ba09fe87df97ebef41f58c73ffaa710">IMP::algebra::PrincipalComponentAnalysisD::get_principal_components()</a>, <a href=
"classIMP_1_1algebra_1_1SparseGridStorageD.html#a9943a6836e190dd7f3f1bff9c550ed8b">IMP::algebra::SparseGridStorageD::get_indexes()</a>, <a href=
"classIMP_1_1algebra_1_1UnboundedGridRangeD.html#ae36705377d9f2caf5c06984d1ce8bfaa">IMP::algebra::UnboundedGridRangeD::get_extended_indexes()</a>, <a href=
"classIMP_1_1atom_1_1BondEndpointsRefiner.html#abb282e495e86d776e420b43fbbd3990f">
IMP::atom::BondEndpointsRefiner::get_refined()</a>, <a href=
"classIMP_1_1atom_1_1BondPairContainer.html#a025387c30ba9910b0ada59357a29571c">
IMP::atom::BondPairContainer::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1atom_1_1Bonded.html#aa7db7f5257bb014fe5111661aff3c814">IMP::atom::Bonded::get_bond_indexes()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMConnection.html#adf29f3ca8131dfa961d939a35ce4af60">
IMP::atom::CHARMMConnection::get_atoms()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMParameters.html#a0605f8d59691de7afd2436348dfdc991">
IMP::atom::CHARMMParameters::create_angles()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMParameters.html#a7aafc32e901ac77cb2b68a944945f8cd">
IMP::atom::CHARMMParameters::create_dihedrals()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMTopology.html#a403b30e23e492dc1da0514bd8f5dd149">
IMP::atom::CHARMMTopology::add_bonds()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMTopology.html#af33d6daa29a776882987d0ee4c4c7507">
IMP::atom::CHARMMTopology::add_dihedrals()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMTopology.html#a8093b89059a159c3c31f4d583843aa36">
IMP::atom::CHARMMTopology::add_impropers()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#ad21bb9279754451fbe57bdebd170faf3">
IMP::atom::Hierarchy::get_children()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#a95fbed1f1a06037900159c8dc6767b35">
IMP::atom::Hierarchy::get_by_type()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#a234db3ebe46ca02a1f2742c535ab3180">
IMP::atom::Hierarchy::get_internal_bonds()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#a88d34e2044a5fbfbb25069331da1b527">
IMP::atom::Hierarchy::get_leaves()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#aa8687c81bbcdd0a54c247d9b6b4a2821">
IMP::atom::Hierarchy::get_leaves()</a>, <a href=
"classIMP_1_1atom_1_1Representation.html#ab31fd97c8a0dda88abe16f0744c17d6a">
IMP::atom::Representation::get_representations()</a>, <a href=
"classIMP_1_1atom_1_1Selection.html#afe161e06395cbac13aa681457cad1a24">
IMP::atom::Selection::get_hierarchies()</a>, <a href=
"classIMP_1_1atom_1_1Selection.html#aaacb47f72e389270dd6217399580480b">
IMP::atom::Selection::get_selected_particle_indexes()</a>, <a href=
"classIMP_1_1atom_1_1Selection.html#abab4978f28c318d2e05e61c8441de4e5">
IMP::atom::Selection::get_selected_particles()</a>, <a href=
"classIMP_1_1atom_1_1Simulator.html#a83441a44bae6268bc408569c43c61dd4">IMP::atom::Simulator::get_particles()</a>, <a href=
"classIMP_1_1atom_1_1Simulator.html#a924853b2f3567b3acebea871cbeadd7c">
IMP::atom::Simulator::get_simulation_particle_indexes()</a>, <a href=
"classIMP_1_1atom_1_1Simulator.html#a62a921c063c2f41bed110af9985a1b21">
IMP::atom::Simulator::get_simulation_particles()</a>, <a href=
"classIMP_1_1bayesianem_1_1GaussianEMRestraint.html#abdcfd8452afc2a86614ed205d0b85909">IMP::bayesianem::GaussianEMRestraint::get_indexes()</a>, <a href=
"classIMP_1_1container_1_1AllBipartitePairContainer.html#a0da09bfe5c46341ca5f30920d567112a">
IMP::container::AllBipartitePairContainer::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1container_1_1AllPairContainer.html#ada5d2bf6d94c82856838a4e3652cba4f">
IMP::container::AllPairContainer::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1container_1_1CloseBipartitePairContainer.html#aae326a7f4a274edc03713b317e99eaf1">
IMP::container::CloseBipartitePairContainer::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1container_1_1ClosePairContainer.html#aacaec307a253333b49f28964e0d75cb8">
IMP::container::ClosePairContainer::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1container_1_1ConnectingPairContainer.html#a67dd9abbb047ffcc34ffe1b9c63deb38">
IMP::container::ConnectingPairContainer::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1container_1_1ConsecutivePairContainer.html#afd639e8ee0a2930972937ad82481b59c">
IMP::container::ConsecutivePairContainer::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1container_1_1ExclusiveConsecutivePairContainer.html#a43ce40c20d8473f8d56a9db57a6c7938">
IMP::container::ExclusiveConsecutivePairContainer::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1container_1_1PairContainerSet.html#a4461008dc22060eca42a36bfa345fe74">
IMP::container::PairContainerSet::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1container_1_1PredicateSingletonsRestraint.html#afe7b9e126e74db54f3f9023a00b52009">
IMP::container::PredicateSingletonsRestraint::get_indexes()</a>, <a href=
"classIMP_1_1container_1_1QuadContainerSet.html#a11a35e05eb5f5d9cf438e5591955f88a">
IMP::container::QuadContainerSet::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1container_1_1SingletonContainerSet.html#a25c34e4fe37a60224b35858b62cc0d72">
IMP::container::SingletonContainerSet::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1container_1_1TripletContainerSet.html#adf054a7ea124e5aaea5525a92f1fbb83">
IMP::container::TripletContainerSet::get_all_possible_indexes()</a>, <a href=
"classIMP_1_1core_1_1ChildrenRefiner.html#afeda09ff69e4e16706f8d3f7a71cfa0a">
IMP::core::ChildrenRefiner::get_refined()</a>, <a href=
"classIMP_1_1core_1_1FixedRefiner.html#aa5dd9970b9e75b2b90d98b2303147995">
IMP::core::FixedRefiner::get_refined()</a>, <a href=
"classIMP_1_1core_1_1FixedRefiner.html#aff0ca83fbd69bede60b4c58b9ada9b1f">
IMP::core::FixedRefiner::get_refined_indexes()</a>, <a href=
"classIMP_1_1core_1_1FixedRefiner.html#a1955d711ba5cb632dcc9e8036c6d6be9">
IMP::core::FixedRefiner::get_refined_indexes_by_ref()</a>, <a href=
"classIMP_1_1core_1_1Hierarchy.html#a3371ae91f1a36c9aff85fa5d185d632c">IMP::core::Hierarchy::get_children_indexes()</a>, <a href=
"classIMP_1_1core_1_1IncrementalScoringFunction.html#ab936c5698c02c09dc99e12040038291b">IMP::core::IncrementalScoringFunction::get_movable_indexes()</a>, <a href=
"classIMP_1_1core_1_1LeavesRefiner.html#ad1f7d37021aa45239a572034bb340b0e">
IMP::core::LeavesRefiner::get_refined()</a>, <a href=
"classIMP_1_1core_1_1MonteCarlo.html#a81a1ed94226894a4d44315e85b860c76">
IMP::core::MonteCarlo::get_movable_particles()</a>, <a href=
"classIMP_1_1core_1_1NeighborsTable.html#a1c9e3ba91c37fe4efb7df9c090679343">
IMP::core::NeighborsTable::get_neighbors()</a>, <a href=
"classIMP_1_1core_1_1RigidBody.html#ae409738df900de261fbf6a8b4f7b55e4">
IMP::core::RigidBody::get_body_member_particle_indexes()</a>, <a href=
"classIMP_1_1core_1_1RigidBody.html#ac4ca78b1b154b54eeebe62e22b2425a6">
IMP::core::RigidBody::get_member_indexes()</a>, <a href=
"classIMP_1_1core_1_1RigidBody.html#a04cbb350db3ffa071668c236772e66be">
IMP::core::RigidBody::get_member_particle_indexes()</a>, <a href=
"classIMP_1_1core_1_1RigidBody.html#a01768cb77a2b5321ce1d5c49eb18e77a">IMP::core::RigidBody::get_rigid_members()</a>, <a href=
"classIMP_1_1core_1_1TableRefiner.html#a466ed7d73f725c9ad9d0ea82f51a64d9">
IMP::core::TableRefiner::get_refined()</a>, <a href=
"classIMP_1_1domino_1_1DisjointSetsSubsetFilterTable.html#a87b82a0650db798f234bf20cdeee6d0a">IMP::domino::DisjointSetsSubsetFilterTable::get_set()</a>, <a href=
"classIMP_1_1domino_1_1ParticleStatesTable.html#a594192bb135e6694bf712941b3f48ccd">IMP::domino::ParticleStatesTable::get_particles()</a>, <a href=
"classIMP_1_1domino_1_1Subset.html#abc363518286114870ac4546205ac71af">IMP::domino::Subset::get_sorted()</a>, <a href=
"classIMP_1_1em_1_1DensityFillingRestraint.html#ad6eef2a0762f8c15bad951708fecb671">IMP::em::DensityFillingRestraint::get_particles()</a>, <a href=
"classIMP_1_1em_1_1EnvelopePenetrationRestraint.html#ab8f4ca1991d0e58327fe87a488dfa4aa">IMP::em::EnvelopePenetrationRestraint::get_particles()</a>, <a href=
"classIMP_1_1em_1_1FitRestraint.html#a730ada38bb3201563d23c2adc91f0c4e">IMP::em::FitRestraint::get_particles()</a>, <a href=
"classIMP_1_1em_1_1PCAFitRestraint.html#ae5b63ae4b18e0ab5fbb1c9c9bd941d7d">IMP::em::PCAFitRestraint::get_particles()</a>, <a href=
"classIMP_1_1em_1_1SampledDensityMap.html#a39c374164a620c8d9b192f9544b6ff91">IMP::em::SampledDensityMap::get_sampled_particles()</a>, <a href=
"classIMP_1_1em_1_1SampledDensityMap.html#ae745f6d6ea9515917c359ef7505bfc4e">IMP::em::SampledDensityMap::get_xyzr_particles()</a>, <a href=
"classIMP_1_1isd_1_1GaussianAnchorEMRestraint.html#a7eb182a4cca0d5e4ed61aaf004b8304f">IMP::isd::GaussianAnchorEMRestraint::get_density_particles()</a>, <a href=
"classIMP_1_1kinematics_1_1KinematicForest.html#a7c78844070f513f8d8118604e8399924">IMP::kinematics::KinematicForest::get_children()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#a1be4d31ffe157cbd577c1deee42d5657">
IMP::kinematics::ProteinKinematics::get_rigid_bodies()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#a6c1567bf70bfaa7ed75330f75915d91b">IMP::kinematics::ProteinKinematics::quick_hack_converter()</a>, <a href=
"classIMP_1_1multi__state_1_1MultiStateModel.html#a228a8de4795302cfd9d07fb4f5d1de5a">IMP::multi_state::MultiStateModel::get_states()</a>, <a href=
"classIMP_1_1multifit_1_1AnchorsData.html#a816d3e8dd82c3dae5aa2294751016ea7">IMP::multifit::AnchorsData::get_secondary_structure_particles()</a>, <a href=
"classIMP_1_1multifit_1_1Ensemble.html#a4156aa95772ba0636c50f0528ff278ac">IMP::multifit::Ensemble::get_molecules()</a>, <a href=
"classIMP_1_1multifit_1_1Ensemble.html#a90987f6d8f5bcdaa856b3effcc6b224b">IMP::multifit::Ensemble::get_rigid_bodies()</a>, <a href=
"classIMP_1_1multifit_1_1GeometricHash.html#ad836b61873521a48bf1a0211f2d139f2">IMP::multifit::GeometricHash::neighbors_data()</a>, <a href=
"classIMP_1_1multifit_1_1ProteomicsEMAlignmentAtomic.html#a8a3bce24cdbd4c2ff9fca7e726560fd0">IMP::multifit::ProteomicsEMAlignmentAtomic::get_molecules()</a>, <a href=
"classIMP_1_1multifit_1_1ProteomicsEMAlignmentAtomic.html#a8db692880725a7de95df804f50deaeed">IMP::multifit::ProteomicsEMAlignmentAtomic::get_rigid_bodies()</a>, <a href=
"classIMP_1_1multifit_1_1RadiusOfGyrationRestraint.html#aab75ced79c6728b64ab4ee8cfdeb3439">IMP::multifit::RadiusOfGyrationRestraint::get_particles()</a>, <a href=
"classIMP_1_1multifit_1_1RigidLeavesRefiner.html#afcd0f6a511ac58a96c4271f655e12bdd">
IMP::multifit::RigidLeavesRefiner::get_refined()</a>, <a href=
"classIMP_1_1multifit_1_1WeightedExcludedVolumeRestraint.html#aef5d9066289f76259952823c0add7ff8">IMP::multifit::WeightedExcludedVolumeRestraint::get_particles()</a>, <a href=
"classIMP_1_1npctransport_1_1FGChain.html#af525394f2d40de0e2582fd7b74451d24">
IMP::npctransport::FGChain::get_beads()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#ac74ed5ad4a9b3e5df4efaf8c2ef64221">
IMP::npctransport::SimulationData::get_beads()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#a9fd32e5f37d18e0a7f7fa0928f12776f">
IMP::npctransport::SimulationData::get_beads_byref()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#a7fd6303499deed5e9c6e2c0cea99d0f7">
IMP::npctransport::SimulationData::get_fg_chain_roots()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#aff2a4f1e5c3fe124d47f7747d8cc5177">
IMP::npctransport::SimulationData::get_fg_chains()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#a59e5c508e8d5f8b3a3867476bf649c25">
IMP::npctransport::SimulationData::get_non_optimizable_beads()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#a986e19289e25a3317b55ca5e7bb45784">
IMP::npctransport::SimulationData::get_obstacle_particles()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#accc16c1b9bd4f5223e6ab1c4b243011f">
IMP::npctransport::SimulationData::get_optimizable_beads()</a>, <a href=
"classIMP_1_1rmf_1_1SimpleLoadLink.html#a8c568d0291111015e06845c3c6466f39">
IMP::rmf::SimpleLoadLink::create()</a>, <a href=
"classIMP_1_1rmf_1_1SimpleLoadLink.html#acb250839c30652b3b67bb63c8beb3429">
IMP::rmf::SimpleLoadLink::create()</a>, <a href=
"classIMP_1_1saxs_1_1FormFactorTable.html#a41e3c1b2e22f41645e9dff51f31a5b19">
IMP::saxs::FormFactorTable::get_dummy_form_factors()</a>, <a href=
"classIMP_1_1saxs_1_1FormFactorTable.html#ab90fa63100485221a07d9549b5ac32fb">
IMP::saxs::FormFactorTable::get_form_factors()</a>, <a href=
"classIMP_1_1saxs_1_1FormFactorTable.html#ad841c2816abc2dcf15547ed76ef2ffda">
IMP::saxs::FormFactorTable::get_vacuum_form_factors()</a>, <a href=
"classIMP_1_1saxs_1_1FormFactorTable.html#a5c4c424ba167aa6b10159f3163853813">
IMP::saxs::FormFactorTable::get_water_dummy_form_factors()</a>, <a href=
"classIMP_1_1saxs_1_1FormFactorTable.html#adfb626e687665ddf2b7a58dbe5cfc23f">
IMP::saxs::FormFactorTable::get_water_form_factors()</a>, <a href=
"classIMP_1_1saxs_1_1FormFactorTable.html#ace61d6c9bf5b3211bb7865e214be8bad">
IMP::saxs::FormFactorTable::get_water_vacuum_form_factors()</a>, <a href=
"classIMP_1_1saxs_1_1ProfileClustering.html#a4ea42910bc4f3b151a5d690fb436c5f5">IMP::saxs::ProfileClustering::get_clusters()</a>, <a href=
"classIMP_1_1saxs_1_1SolventAccessibleSurface.html#a219d7fc61ef2b987317334a260246b19">
IMP::saxs::SolventAccessibleSurface::get_solvent_accessibility()</a>, <a href=
"classIMP_1_1saxs_1_1WeightedFitParameters.html#aa72f43d7dcbba4b099355869ca622341">IMP::saxs::WeightedFitParameters::get_weights()</a>, <a href=
"classIMP_1_1spb_1_1CellMover.html#a705875dfcd4c101bc54274bcaa94a8c8">IMP::spb::CellMover::get_particles()</a>, <a href=
"classIMP_1_1spb_1_1PbcBoxedRigidBodyMover.html#a9f71be4c0d64eef754e6ba2bf2c0b478">IMP::spb::PbcBoxedRigidBodyMover::get_particles()</a>, <a href=
"classIMP_1_1symmetry_1_1RigidBodyMover.html#a46b76b01c2cd25d8b05ad691ca14bbbc">IMP::symmetry::RigidBodyMover::get_particles()</a>, <a href=
"namespaceIMP.html#af488ed0d8a9b736cc3be4fce11d19829">
IMP::get_input_particles()</a>, <a href=
"namespaceIMP.html#afe628c07ef885af644a24a23643ae5b2">
IMP::get_output_particles()</a>, <a href=
"namespaceIMP.html#ac49fedd9ea52d5339c003cc00c1b906e">
IMP::write_particles_to_buffer()</a>, <a href=
"namespaceIMP.html#ae762869ee2f6a3888dcd62a1f4213566">IMP::get_dependent_particles()</a>, <a href=
"namespaceIMP.html#aabc6b814ba85ea74a1b3f9f0ce8c06cf">
IMP::get_indexes()</a>, <a href=
"namespaceIMP.html#a282964e47bdd3107ef2e3ef72df66001">
IMP::get_particles()</a>, <a href=
"namespaceIMP_1_1atom.html#a4383e2b7c2330222eaba39867aa4b12d">
IMP::atom::read_multimodel_pdb()</a>, <a href=
"namespaceIMP_1_1atom.html#a293b1fa9409fb92e7830afe81571c03b">IMP::atom::read_psipred()</a>, <a href=
"namespaceIMP_1_1atom.html#a1b00eeb0093e23eb053c3686e71dbee3">IMP::atom::read_psipred()</a>, <a href=
"namespaceIMP_1_1atom.html#a8f2e62640647e36570c22b0328283a9c">
IMP::atom::get_charmm_untyped_atoms()</a>, <a href=
"namespaceIMP_1_1atom.html#ad62901c76275a45e34aed68c76548508">
IMP::atom::get_chi_dihedral_atom_types()</a>, <a href=
"namespaceIMP_1_1atom.html#a30ce58af4f3485274c3c59c7170d6698">
IMP::atom::get_chi_dihedral_atoms()</a>, <a href=
"namespaceIMP_1_1atom.html#af5b0cc808be9672d3996baeb2f9210fd">
IMP::atom::get_leaves()</a>, <a href=
"namespaceIMP_1_1atom.html#a5ceb85645196ab77765e0ffad9866330">
IMP::atom::get_omega_dihedral_atoms()</a>, <a href=
"namespaceIMP_1_1atom.html#a6ef3ab3e84fd5ab0e83ce40fdc675455">
IMP::atom::get_phi_dihedral_atoms()</a>, <a href=
"namespaceIMP_1_1atom.html#a1c15e940e47a1a8f5872029fcb93c601">
IMP::atom::get_psi_dihedral_atoms()</a>, <a href=
"namespaceIMP_1_1atom.html#a8dd513ff4e39c4c40c56e11f2d23da94">
IMP::atom::read_multimodel_mmcif()</a>, <a href=
"namespaceIMP_1_1atom.html#ae2befbe269f1b12d6ccfd31fff5d4673">
IMP::atom::read_multimodel_pdb_or_mmcif()</a>, <a href=
"namespaceIMP_1_1atom.html#a886a95c9c35244e6120f8484f501bdb9">
IMP::atom::setup_coarse_secondary_structure_residues()</a>, <a href=
"namespaceIMP_1_1core.html#aa9f324c68944164bd609b55bb3ca3b44">
IMP::core::create_rigid_bodies()</a>, <a href=
"namespaceIMP_1_1core.html#ad63b32c4f50e42d6ca6d72fa75b5cc02">
IMP::core::create_xyzr_particles()</a>, <a href=
"namespaceIMP_1_1domino.html#a0f43ef4b4efed8a9481e65694ce3fadb">
IMP::domino::get_order()</a>, <a href=
"namespaceIMP_1_1em.html#ad7c905f64de2740109026908aaa1e952">
IMP::em::density2particles()</a>, <a href=
"namespaceIMP_1_1npctransport.html#af4eac42b841cb74c967c2f4284ddb1d0">
IMP::npctransport::create_hierarchies_with_sites()</a>, <a href=
"namespaceIMP_1_1npctransport.html#a5c9e777a69706ccc7d158f6dcfe50950">
IMP::npctransport::get_non_optimizable_particles()</a>, <a href=
"namespaceIMP_1_1npctransport.html#aa2114c9f9168cf02dccc106844de85ec">
IMP::npctransport::get_optimizable_particles()</a>, <a href=
"namespaceIMP_1_1npctransport.html#aca539801adb3226e34f7e8c7598dd0b8">
IMP::npctransport::get_particle_indexes()</a>, <a href=
"namespaceIMP_1_1rmf.html#a34bff2a310116bc205e199ae6442be5d">
IMP::rmf::create_hierarchies()</a>, <a href=
"namespaceIMP_1_1rmf.html#af3c5165b1f2cb083d98c36bd202ef275">
IMP::rmf::create_particles()</a>, <a href=
"namespaceIMP_1_1spb.html#af9854762e7ddee17e6b588f2a8502c20">IMP::spb::create_coiled_coil()</a>, <a href=
"namespaceIMP_1_1spb.html#ae9d935784a933409cd306c7c046cfff6">IMP::spb::create_representation()</a></td></tr>
43 <tr><td>@ref
IMP::VersionInfo</td><td><a href=
"classIMP_1_1Configuration.html#a0df5a2ec9e48e8268f5e008bae545c39">
IMP::Configuration::get_version_info()</a>, <a href=
"classIMP_1_1ConfigurationSet.html#ab9b5cb9833f3a23cc802308e5d722b30">
IMP::ConfigurationSet::get_version_info()</a>, <a href=
"classIMP_1_1Model.html#a817196365b0ee242b12c1c543eaa1279">
IMP::Model::get_version_info()</a>, <a href=
"classIMP_1_1Object.html#a0bed6774bc4e0652d9de26295d9439cf">
IMP::Object::get_version_info()</a>, <a href=
"classIMP_1_1Particle.html#aa9e5504393c6fac577b6bd2fffd4a7b1">
IMP::Particle::get_version_info()</a>, <a href=
"classIMP_1_1RestraintInfo.html#abc19188697b1591e0ec3b25a041360df">
IMP::RestraintInfo::get_version_info()</a>, <a href=
"classIMP_1_1RestraintSet.html#ac40bd2896f33424c019de2fbca1779d3">
IMP::RestraintSet::get_version_info()</a>, <a href=
"classIMP_1_1SaveToConfigurationSetOptimizerState.html#ac802ba0ad75e3604f3a41335f6557f01">
IMP::SaveToConfigurationSetOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1algebra_1_1DynamicNearestNeighbor3D.html#aee86931720c3d710e519da0bb518d466">
IMP::algebra::DynamicNearestNeighbor3D::get_version_info()</a>, <a href=
"classIMP_1_1algebra_1_1EuclideanVectorKDMetric.html#a2252aab492429182b6f556a60c381b23">
IMP::algebra::EuclideanVectorKDMetric::get_version_info()</a>, <a href=
"classIMP_1_1algebra_1_1MaxVectorKDMetric.html#a4cd6665bf060264578134ff50e763f2c">
IMP::algebra::MaxVectorKDMetric::get_version_info()</a>, <a href=
"classIMP_1_1algebra_1_1NearestNeighborD.html#a4e83603909f8de979ea7f112ee927c27">
IMP::algebra::NearestNeighborD::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1ATOMPDBSelector.html#af0ad2b89ed50867707e8f51529fe5e45">
IMP::atom::ATOMPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1AllPDBSelector.html#a446cf432e96ce5cd42bd9209f53776d2">
IMP::atom::AllPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1AndPDBSelector.html#ad3bf84f63820eb6ef97ed2b56cc3f277">
IMP::atom::AndPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1AngleSingletonScore.html#a64bb86201cfd7b40e82953650e1f0469">
IMP::atom::AngleSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1AtomTypePDBSelector.html#a303fc5aa4f46af808da185d41d54ad79">
IMP::atom::AtomTypePDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1BackbonePDBSelector.html#a72b3b039751e66ca792a07f72eb1b3f9">
IMP::atom::BackbonePDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1BerendsenThermostatOptimizerState.html#a986f9c308b693a5a456f215226a70852">
IMP::atom::BerendsenThermostatOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1BondEndpointsRefiner.html#a123607fbf0642a5bfa27dfad5cb8603f">
IMP::atom::BondEndpointsRefiner::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1BondGeometry.html#a4da629eddc9ba905a7b37f6e054445cd">
IMP::atom::BondGeometry::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1BondPairContainer.html#a112a9b103b75c5cc69607994d7cee36a">
IMP::atom::BondPairContainer::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1BondSingletonScore.html#a0b77c4bb6015e4da818df20d794bffa3">
IMP::atom::BondSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1BondedPairFilter.html#aa1ccea5c433e6bd859fb6ec07772af53">
IMP::atom::BondedPairFilter::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1BondsGeometry.html#a607c58dd0bf8b0431a39c27d5fd3a9ef">
IMP::atom::BondsGeometry::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1BrownianDynamics.html#a73991c4c8ddc0b11d0ed367ef3e7a2fa">
IMP::atom::BrownianDynamics::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CAAngleRestraint.html#a771458ed2a4b0d3e1b8b145a04319fb3">
IMP::atom::CAAngleRestraint::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CADihedralRestraint.html#a137596f2c1862ab4879d14c05fb2fa84">
IMP::atom::CADihedralRestraint::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CAlphaPDBSelector.html#af4220cb6310f058a7a37750a6d6bef14">
IMP::atom::CAlphaPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CBetaPDBSelector.html#a95c59b67043add51ad669e1715389922">
IMP::atom::CBetaPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMIdealResidueTopology.html#a69558827eb1895912f17fd60830a8fc9">
IMP::atom::CHARMMIdealResidueTopology::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMParameters.html#a8e49f9593c4e590c2de723f02c72388b">
IMP::atom::CHARMMParameters::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMPatch.html#a297c120062e03d29e5d02e5b8e08a6e6">
IMP::atom::CHARMMPatch::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMResidueTopology.html#a5d2b4791719ee769e1df174a27d5b54e">
IMP::atom::CHARMMResidueTopology::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMResidueTopologyBase.html#aecf824f2c728ce829550f040ca42cc1b">
IMP::atom::CHARMMResidueTopologyBase::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMSegmentTopology.html#ae56e9a25faeb6905c66b4ccf1cde5ac9">
IMP::atom::CHARMMSegmentTopology::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMStereochemistryRestraint.html#aa0a0d02979824db5968a74a00b8264d0">
IMP::atom::CHARMMStereochemistryRestraint::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMTopology.html#ab67bc34be56b6f1f31a508a433314577">
IMP::atom::CHARMMTopology::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CPDBSelector.html#a743620cbfbbe1bab708db1ddd2b9d20e">
IMP::atom::CPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1ChainPDBSelector.html#ade768d87e85cd3cd7229bd605be9da71">
IMP::atom::ChainPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CoulombPairScore.html#a0da98d7ccd7be1992e67504a3472bb5c">
IMP::atom::CoulombPairScore::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1CoverBond.html#af7d371e7732b0d9e2eba35225d2a284f">
IMP::atom::CoverBond::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1DihedralSingletonScore.html#a8500f7f57e95bf24bd3301de9b57cee2">
IMP::atom::DihedralSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1EzRestraint.html#a12c6b292b25d2339883fc3b17e2597f8">
IMP::atom::EzRestraint::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1ForceSwitch.html#a72000176781e4c595a7707b823aa6dfe">
IMP::atom::ForceSwitch::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1HelixRestraint.html#aadd26a345d0e5971715e669654af3092">
IMP::atom::HelixRestraint::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1HierarchiesGeometry.html#a82103c2bf2eec9bfe4b53585d75345ea">
IMP::atom::HierarchiesGeometry::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1HierarchyGeometry.html#a202e2159cd1a3c3c73ea1d264186f8b8">
IMP::atom::HierarchyGeometry::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1HydrogenPDBSelector.html#a29bf6c055415b58461901f8f45e4cda7">
IMP::atom::HydrogenPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1ImproperSingletonScore.html#a7862aff542f418b646507baa4257a87f">
IMP::atom::ImproperSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1LangevinThermostatOptimizerState.html#a46a0575abec12f6eb0e821f1436645f1">
IMP::atom::LangevinThermostatOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1LennardJonesPairScore.html#a12c037cf9bf85140d475d9577b5c46e4">
IMP::atom::LennardJonesPairScore::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1MolecularDynamics.html#a28e3d11e6b8ec16ecdb682241f316178">
IMP::atom::MolecularDynamics::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1NPDBSelector.html#a9e16a84b13960010db8be9361ef20503">
IMP::atom::NPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1NonAlternativePDBSelector.html#a267c08807bc7234167a93347d686578d">
IMP::atom::NonAlternativePDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1NonHydrogenPDBSelector.html#a89e2e27e27210eaa16825d70dbc3ca14">
IMP::atom::NonHydrogenPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1NonWaterNonHydrogenPDBSelector.html#a168b2dd8f88ca1c2bddbde222718c498">
IMP::atom::NonWaterNonHydrogenPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1NonWaterPDBSelector.html#a4025d23c61bb684e8788656de274f883">
IMP::atom::NonWaterPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1NotPDBSelector.html#af6218e0900f08f51bf6159f57eac264f">
IMP::atom::NotPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1OrPDBSelector.html#adc908ac84b2936fbfa7952a90d2c964b">
IMP::atom::OrPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1PPDBSelector.html#a9d6db242eaff7b92cd8088b85e096b82">
IMP::atom::PPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1RemoveRigidMotionOptimizerState.html#a1e9e0da00f7bfbb5c24d03708a9f94e6">
IMP::atom::RemoveRigidMotionOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1RemoveTranslationOptimizerState.html#a3ecc92d453dc8b8cb57f518517f0c985">
IMP::atom::RemoveTranslationOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1ResidueTypePDBSelector.html#a1ccc4968363db29b3a00d97177f065b5">
IMP::atom::ResidueTypePDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1SameResiduePairFilter.html#a7640491e64e7d5ce9cb2516bb5a7d39b">
IMP::atom::SameResiduePairFilter::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1SelectionGeometry.html#a024a11a68e1342d2c6d83f66ee070565">
IMP::atom::SelectionGeometry::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1SoapPairFilter.html#a1f696b7e8bdc4feb73bc3f16930ce26c">
IMP::atom::SoapPairFilter::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1StereochemistryPairFilter.html#a031795d4e6124a300ebe3bb4d2d9a43f">
IMP::atom::StereochemistryPairFilter::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1VelocityScalingOptimizerState.html#aba0fd89f911cfe4fc2b87c02e025dca7">
IMP::atom::VelocityScalingOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1WaterPDBSelector.html#a311431fc338900a7acfef0282e866b57">
IMP::atom::WaterPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1WritePDBOptimizerState.html#a2790f1f7f6d2b1e0b393bdaa27506670">
IMP::atom::WritePDBOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1atom_1_1XorPDBSelector.html#a3a398b8f18e689f36356e78271857ace">
IMP::atom::XorPDBSelector::get_version_info()</a>, <a href=
"classIMP_1_1bayesianem_1_1GaussianEMRestraint.html#ae9077bdd35130ccf639147e764e409f8">
IMP::bayesianem::GaussianEMRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1AllBipartitePairContainer.html#a67b2c829dceae3676dba3cb3d1b66e18">
IMP::container::AllBipartitePairContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1AllPairContainer.html#ae23c92462f9d73a74d5b4e697e44b0b7">
IMP::container::AllPairContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1CloseBipartitePairContainer.html#ab981f1c646107a2e8055b9a1d9eb939d">
IMP::container::CloseBipartitePairContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1ClosePairContainer.html#a197827f06a3b743ad25384f3ae59b085">
IMP::container::ClosePairContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1ConnectingPairContainer.html#a8a4e668e4b8f998efbdae7891d46bbe8">
IMP::container::ConnectingPairContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1ConsecutivePairContainer.html#a5bfea792d59922bb28c5b538c34e5bfa">
IMP::container::ConsecutivePairContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1ConsecutivePairFilter.html#a423f25e2b558c4003c640bc91b0a7a26">
IMP::container::ConsecutivePairFilter::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1DistributePairsScoreState.html#a2664312d4395939ad143a6a6008e5fd2">
IMP::container::DistributePairsScoreState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1DistributeQuadsScoreState.html#a5d3ce251e1c01cbb423ab3bcf2f817c8">
IMP::container::DistributeQuadsScoreState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1DistributeSingletonsScoreState.html#a42637967aae7f1bd6d8862f673aff457">
IMP::container::DistributeSingletonsScoreState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1DistributeTripletsScoreState.html#a41e980f8efe333ff0fcfdc54123ddb71">
IMP::container::DistributeTripletsScoreState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1DynamicListPairContainer.html#affa7a38179e08037ce25b2758dee0020">
IMP::container::DynamicListPairContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1DynamicListQuadContainer.html#a5fa378230d7ea5e0b730c0bfd7c39d5a">
IMP::container::DynamicListQuadContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1DynamicListSingletonContainer.html#a82b74960b4524dee0f396e12ea2701ff">
IMP::container::DynamicListSingletonContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1DynamicListTripletContainer.html#a2e41d33db980370950182261aea48b23">
IMP::container::DynamicListTripletContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1EventPairsOptimizerState.html#ae7c15d439173b540965a66b8d7c06710">
IMP::container::EventPairsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1EventQuadsOptimizerState.html#a0dfde42f8fe569e33eb39f484d2c6d38">
IMP::container::EventQuadsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1EventSingletonsOptimizerState.html#a3a29eedab2dd4be768dfca1db74b2ff2">
IMP::container::EventSingletonsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1EventTripletsOptimizerState.html#adb8935c64b27b28973e42810e17fc03c">
IMP::container::EventTripletsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1ExclusiveConsecutivePairContainer.html#a36f65716f046dfd9c0b0325a01949958">
IMP::container::ExclusiveConsecutivePairContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1ExclusiveConsecutivePairFilter.html#ae82650ca3072844eb4fb3eaa59be8f74">
IMP::container::ExclusiveConsecutivePairFilter::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1InContainerPairFilter.html#a4d46398be5e737af3c3a6bdd29091971">
IMP::container::InContainerPairFilter::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1InContainerQuadFilter.html#a27ed74efcc83670b33658af5afb37c7d">
IMP::container::InContainerQuadFilter::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1InContainerSingletonFilter.html#a7eaeab53195a5b3404f79f5bc90e21f9">
IMP::container::InContainerSingletonFilter::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1InContainerTripletFilter.html#af94f895ee63e1a4e46c1c9aaef0d1552">
IMP::container::InContainerTripletFilter::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1ListPairContainer.html#a62588367d2d8760248ad208085274d75">
IMP::container::ListPairContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1ListQuadContainer.html#a9830548ab0a14353c59c95e66a07699e">
IMP::container::ListQuadContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1ListSingletonContainer.html#abe81dbd71533d531f22f1f72f38bf688">
IMP::container::ListSingletonContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1ListTripletContainer.html#a67f8e022b2fe311cd9583ee4a30b1570">
IMP::container::ListTripletContainer::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1MinimumPairRestraint.html#ac59c4347150ee8c0e5ad8972e24dc821">
IMP::container::MinimumPairRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1MinimumPairScore.html#a0393059529a9074f8b5f2ede74f92100">
IMP::container::MinimumPairScore::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1MinimumQuadRestraint.html#a838c07acee6b6228857b232a58e513fc">
IMP::container::MinimumQuadRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1MinimumQuadScore.html#ab1fb7f257ab9d8604e6f1d0f8e25013b">
IMP::container::MinimumQuadScore::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1MinimumSingletonRestraint.html#a4bb396657b50c6770ef67f6bd249340b">
IMP::container::MinimumSingletonRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1MinimumSingletonScore.html#ae1a2ccd94dd633e1e0c42ef51baeac10">
IMP::container::MinimumSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1MinimumTripletRestraint.html#a6964442cb9dc3e0c1c8965e56753cc82">
IMP::container::MinimumTripletRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1MinimumTripletScore.html#adeb916b8057fbf8aa32bc2fb65a334e5">
IMP::container::MinimumTripletScore::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1PairContainerSet.html#a11ca10692154b9c44cb4b208e02783c2">
IMP::container::PairContainerSet::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1PairContainerStatistics.html#a3c83d0c51d660d7737b95280077c95f4">
IMP::container::PairContainerStatistics::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1PairsConstraint.html#a3020ddd71d22ff24565a1038e60f6816">
IMP::container::PairsConstraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1PairsOptimizerState.html#a4ae46a818257794b061e226a5d518ac2">
IMP::container::PairsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1PairsRestraint.html#a187c436f9ed9938df3fd6ca218cf6f81">
IMP::container::PairsRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1PredicatePairsRestraint.html#aa7136bdcedfde717007e5ed5f95139b6">
IMP::container::PredicatePairsRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1PredicateQuadsRestraint.html#ada9e13848ceb47f2a9aafe417430a283">
IMP::container::PredicateQuadsRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1PredicateSingletonsRestraint.html#a427406082e02b026eaca241440e89c38">
IMP::container::PredicateSingletonsRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1PredicateTripletsRestraint.html#aa0293d241d2dbc12f6edfab516c04917">
IMP::container::PredicateTripletsRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1QuadContainerSet.html#a0a2cef5b117499341c48cf4085cf6969">
IMP::container::QuadContainerSet::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1QuadContainerStatistics.html#a85fcd96f7a479889f78719130fc16640">
IMP::container::QuadContainerStatistics::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1QuadsConstraint.html#ad9bb24391d42077e18179d725cb1439e">
IMP::container::QuadsConstraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1QuadsOptimizerState.html#a5d3331ed0068c2cc11a2021f620b31ad">
IMP::container::QuadsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1QuadsRestraint.html#a93535a93baa8d4b039a24fa4ecce0502">
IMP::container::QuadsRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1SingletonContainerSet.html#a2555da5c524271dd5d4c66ca86017d84">
IMP::container::SingletonContainerSet::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1SingletonContainerStatistics.html#afc21aa74a45137b5b514ac021ef25dbf">
IMP::container::SingletonContainerStatistics::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1SingletonsConstraint.html#a6d1d8a1cb9bb3b352b212529e373b508">
IMP::container::SingletonsConstraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1SingletonsOptimizerState.html#a22e5d06d6e770b2a9f58eee5429a9e24">
IMP::container::SingletonsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1SingletonsRestraint.html#a40264231417d69739a201372bb6c84f1">
IMP::container::SingletonsRestraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1TripletContainerSet.html#a2192234e34e2c4006af9d191f744f959">
IMP::container::TripletContainerSet::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1TripletContainerStatistics.html#aa2ac6cb8538ccad1891e2d408c219496">
IMP::container::TripletContainerStatistics::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1TripletsConstraint.html#a18a88e9259034a4fc0905e802eaeae2e">
IMP::container::TripletsConstraint::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1TripletsOptimizerState.html#ac274fa618fb39f8358a5a6e0104d803c">
IMP::container::TripletsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1container_1_1TripletsRestraint.html#a02f754ab4755d1feab267e98d51923b0">
IMP::container::TripletsRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1AllSamePairPredicate.html#a9ad26431cc0ea067a91450a015133d2b">
IMP::core::AllSamePairPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1AllSameQuadPredicate.html#a374e81391cf9bd4be937899b696febc9">
IMP::core::AllSameQuadPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1AllSameSingletonPredicate.html#aa109e91872fbfdbfc2e210f456dd52cc">
IMP::core::AllSameSingletonPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1AllSameTripletPredicate.html#a8277296a92415c0555e6da8ab1a3eb38">
IMP::core::AllSameTripletPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1AngleRestraint.html#a2e678797c45616240fed5184d2b688cf">
IMP::core::AngleRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1AngleTripletScore.html#a6a5d9241b9bf17cd0f1794f083490679">
IMP::core::AngleTripletScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1AttributeSingletonPredicate.html#afc8dd78f537323b5b5c0461327574a5c">
IMP::core::AttributeSingletonPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1BallMover.html#a058a5e320be2be448f13ba34b651f9bc">
IMP::core::BallMover::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1BoxSweepClosePairsFinder.html#ae303fd9ae894b7b1a4eae5423fb9a5cc">
IMP::core::BoxSweepClosePairsFinder::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1CentroidOfRefined.html#a302cd9106f51b4f098ba3827a76b84f2">
IMP::core::CentroidOfRefined::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ChecksScoreState.html#ad01f1cd23510ba0bc827347a9a5141a0">
IMP::core::ChecksScoreState::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ChildrenRefiner.html#ac44d32467d7bf4af574aa14ed8d04396">
IMP::core::ChildrenRefiner::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ClosePairsPairScore.html#ac0ede8ed1537d058e8f3ca4cade26d76">
IMP::core::ClosePairsPairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ClosedCubicSpline.html#a754a2ad1a52b12da7325aa914c80e923">
IMP::core::ClosedCubicSpline::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1CoinFlipPairPredicate.html#a4d5b24ff7f250c33d1bf182e6d269bba">
IMP::core::CoinFlipPairPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1CoinFlipQuadPredicate.html#a731b94c45e06e5cb9a7b1384f3c3886b">
IMP::core::CoinFlipQuadPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1CoinFlipSingletonPredicate.html#a5dcba2a022b4c3ae19dd287569994fca">
IMP::core::CoinFlipSingletonPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1CoinFlipTripletPredicate.html#a8d68576feb7fa7ca949e00a41f0d5b41">
IMP::core::CoinFlipTripletPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ConjugateGradients.html#ab8a9058a7d329263642d1c8a0e38c673">
IMP::core::ConjugateGradients::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ConnectivityRestraint.html#a2e679c6665bdabca8c44cc928e30af03">
IMP::core::ConnectivityRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ConstantPairPredicate.html#a15439b8b219e5bb20045d6b379985ecc">
IMP::core::ConstantPairPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ConstantQuadPredicate.html#a439557cde4cdeca7ee4dc2fe0d2f3ed2">
IMP::core::ConstantQuadPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ConstantRestraint.html#ade332dbb1f9a63d689cb07268b09dbe1">
IMP::core::ConstantRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ConstantSingletonPredicate.html#adb078d3dec046b92b28de2f22f4a1fee">
IMP::core::ConstantSingletonPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ConstantTripletPredicate.html#ab1c20afddb3661a1fb22e94caa5141b9">
IMP::core::ConstantTripletPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1Cosine.html#aa170167a57c222c8257b451be936f331">
IMP::core::Cosine::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1CoverRefined.html#ab2361c76f0e4573acd73a00d0dd725d8">
IMP::core::CoverRefined::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1DerivativesFromRefined.html#abca1d18945a60fae0d61590f9c306f8e">
IMP::core::DerivativesFromRefined::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1DerivativesToRefined.html#a44f7b652888bda4c397467e7d9cbdc5b">
IMP::core::DerivativesToRefined::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1DiameterRestraint.html#a1bafd3d3cfa48432babd76a9f209e2e5">
IMP::core::DiameterRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1DihedralRestraint.html#a9c00beb1e15795241d0bc884960d46f5">
IMP::core::DihedralRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1DirectionMover.html#a891b02d09066930daf1129e9c7a64dbb">
IMP::core::DirectionMover::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1DistancePairScore.html#a82170dc94fa857b1042ecec227c0403c">
IMP::core::DistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1EdgePairGeometry.html#a0d84d26f022f9ef7efd1ee33ef3c50dc">
IMP::core::EdgePairGeometry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1EdgePairsGeometry.html#a2848e5a7d52adf49944bfc676797ffeb">
IMP::core::EdgePairsGeometry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1ExcludedVolumeRestraint.html#a6cbaa5f3eb39ae625ae568bf4b104f31">
IMP::core::ExcludedVolumeRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1FixedRefiner.html#a24b8ac24a9622f2d14547613162bd812">
IMP::core::FixedRefiner::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1GenericAttributeSingletonScore.html#a12f7ffa7bcc7cc45d60d8284b52cb1e8">
IMP::core::GenericAttributeSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1GenericBoundingBox3DSingletonScore.html#a77a3c46f81a658cf1b6efe451e893506">
IMP::core::GenericBoundingBox3DSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1GenericBoundingSphere3DSingletonScore.html#a0f77e6ff5d5cc50777520ed179425737">
IMP::core::GenericBoundingSphere3DSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1GenericDistanceToSingletonScore.html#aed2666a556c568951eb427bab60ee2e9">
IMP::core::GenericDistanceToSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1GridClosePairsFinder.html#aaf5f26fc8e31be137311b9742b274d53">
IMP::core::GridClosePairsFinder::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1Harmonic.html#abababdcb0ba9b6e9ba12eaf032ce35dc">
IMP::core::Harmonic::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1HarmonicDistancePairScore.html#a146cfc937adb46ae7c70abb9139e34ed">
IMP::core::HarmonicDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1HarmonicLowerBound.html#aa13cee85e96ee87bd963c0100f11b96d">
IMP::core::HarmonicLowerBound::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1HarmonicSphereDistancePairScore.html#a0fccb94d115f749b6189627f68332b14">
IMP::core::HarmonicSphereDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1HarmonicSurfaceDepthPairScore.html#ad7085e269b4d97ecaeec0ff8a82c18b3">
IMP::core::HarmonicSurfaceDepthPairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1HarmonicSurfaceDistancePairScore.html#a961c19ee6b8eae59b543a07b22d1942f">
IMP::core::HarmonicSurfaceDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1HarmonicSurfaceHeightPairScore.html#a54186c26ba0fcec3995e2097dd2ecd28">
IMP::core::HarmonicSurfaceHeightPairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1HarmonicUpperBound.html#af48567d3d1fbba9ca62eaabfb1c38a7f">
IMP::core::HarmonicUpperBound::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1HarmonicUpperBoundSphereDiameterPairScore.html#a969c007afbc9e7a83f2ff2c53703d9cc">
IMP::core::HarmonicUpperBoundSphereDiameterPairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1HarmonicUpperBoundSphereDistancePairScore.html#a25a007a66aeb3c17c3d1c855f2dac411">
IMP::core::HarmonicUpperBoundSphereDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1HarmonicWell.html#a68eb7424f45a0946d9cd97cfb4662747">
IMP::core::HarmonicWell::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1InBoundingBox3DSingletonPredicate.html#a96690f110830f4ad79feefad1b4382ce">
IMP::core::InBoundingBox3DSingletonPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1IncrementalScoringFunction.html#a27e9e4538519e83f3869df39e91aabfe">
IMP::core::IncrementalScoringFunction::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1IsCollisionPairPredicate.html#aab983d0b55bfa6c251302caff56d08d1">
IMP::core::IsCollisionPairPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1KClosePairsPairScore.html#a9dda420246af663193edb15f0fcd9528">
IMP::core::KClosePairsPairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1LateralSurfaceConstraint.html#a8ad8533614c5417c5c22e5645d1d6ac7">
IMP::core::LateralSurfaceConstraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1LeavesRefiner.html#a516af7c565a87ec7616aea276e648a72">
IMP::core::LeavesRefiner::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1Linear.html#a176356dc3597315f072ec312f01be60d">
IMP::core::Linear::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1LogNormalMover.html#abc21c2d36a44bd7d61b6819be15910b9">
IMP::core::LogNormalMover::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1MCCGSampler.html#a556fd035911c5d7deb510054cf6055e5">
IMP::core::MCCGSampler::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1MSConnectivityRestraint.html#afcc08e6f92e81afafbc25c2632ae9045">
IMP::core::MSConnectivityRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1MinimumRestraint.html#ae1f1e2d802aaa4dfdba8849e1f25a7a0">
IMP::core::MinimumRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1MonteCarlo.html#a0a097d83a328dafcd5edd24cea3b8b1c">
IMP::core::MonteCarlo::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1MonteCarloWithBasinHopping.html#abef16611ac327362fd5a3db0c24faa9d">
IMP::core::MonteCarloWithBasinHopping::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1MonteCarloWithLocalOptimization.html#a2ca099b6c3e31bde7d34af43329f1542">
IMP::core::MonteCarloWithLocalOptimization::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1MoveStatisticsScoreState.html#a3361ebc888b090da0de1609b08647a8e">
IMP::core::MoveStatisticsScoreState::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1MultipleBinormalRestraint.html#a024abdc4aa41c38b15e5dbec421a4cb4">
IMP::core::MultipleBinormalRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1NearestNeighborsClosePairsFinder.html#ad16ded6a467cf027790169ea559d66e3">
IMP::core::NearestNeighborsClosePairsFinder::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1NeighborsTable.html#a8019007c6b82b8f09d29e2639271d772">
IMP::core::NeighborsTable::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1NormalMover.html#ab07512fcf64f610c6ffee5f44ddb76d9">
IMP::core::NormalMover::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1NormalizedSphereDistancePairScore.html#a65ce03643ad1384d978dc7c9d72f329b">
IMP::core::NormalizedSphereDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1OrderedTypePairPredicate.html#a9b19fec319eb4a4c1c9e8e37095a1e26">
IMP::core::OrderedTypePairPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1OrderedTypeQuadPredicate.html#a6639292ca4fd3c5e96e2d817b567ca30">
IMP::core::OrderedTypeQuadPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1OrderedTypeSingletonPredicate.html#a540af64f8faea876e13cbe5e37cbde7e">
IMP::core::OrderedTypeSingletonPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1OrderedTypeTripletPredicate.html#abaa5854c5289b4ec56ae8c530c37cecf">
IMP::core::OrderedTypeTripletPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1PairConstraint.html#aace710ce66e2e7672c3287e14e9c6414">
IMP::core::PairConstraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1PairRestraint.html#ab05162dbcdce15c6e5d2f81991825c94">
IMP::core::PairRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1PredicateSingletonScore.html#a3585af08e12bcd10dee0f22826202efb">
IMP::core::PredicateSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1QuadConstraint.html#a409934e38006fc4ea346957069216475">
IMP::core::QuadConstraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1QuadRestraint.html#a803a53ae58562df97dae411560ba9106">
IMP::core::QuadRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1QuadraticClosePairsFinder.html#a2532d2f73624f50dc1488295055fe6e3">
IMP::core::QuadraticClosePairsFinder::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1RefinedPairsPairScore.html#abbdd5f9cf19b4a72b30179b74ce65705">
IMP::core::RefinedPairsPairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyAnglePairScore.html#a1ab0d14c016dca9f176ecc3df50375a0">
IMP::core::RigidBodyAnglePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyDerivativeGeometry.html#a8d0634c985d29fd2698c229c3a703536">
IMP::core::RigidBodyDerivativeGeometry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyDerivativesGeometry.html#aebb8cf5af5f8819ab03bd42363170425">
IMP::core::RigidBodyDerivativesGeometry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyFrameGeometry.html#aea89197a62c0f289998502f728951b0f">
IMP::core::RigidBodyFrameGeometry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyFramesGeometry.html#ad6c6ef690fb6b876a55fae62af29dd45">
IMP::core::RigidBodyFramesGeometry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyHierarchyGeometry.html#a2ff6751efb50d5c5b410c87f6995950b">
IMP::core::RigidBodyHierarchyGeometry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyMover.html#a46a12a49cbabcbfe395c4bd42ccd91c9">
IMP::core::RigidBodyMover::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyTunneler.html#acf76e2f412a4990b1feafa00eac4c204">
IMP::core::RigidBodyTunneler::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyUmbrella.html#ac2285c0990390d483c9cf91f06dd5e56">
IMP::core::RigidBodyUmbrella::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1RigidClosePairsFinder.html#acddff6b67dc283a5524de30cc0c9ae20">
IMP::core::RigidClosePairsFinder::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SerialMover.html#a4eee84989701323a587fa34c2df48735">
IMP::core::SerialMover::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SingletonConstraint.html#ad74ccae7c40b54c3242b6177d34cc18d">
IMP::core::SingletonConstraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SingletonRestraint.html#a0faa236c07c2312a1544bc338c0b59b5">
IMP::core::SingletonRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SoftSpherePairScore.html#af3306b7892a3b1676c4fa6190bde0273">
IMP::core::SoftSpherePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SoftSubSurfacePairScore.html#a1d8db46ece7bb35dad47cf24c364f775">
IMP::core::SoftSubSurfacePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SoftSuperSurfacePairScore.html#ad95e82ec708c89dcd6e7855156ecedc9">
IMP::core::SoftSuperSurfacePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SphereDistancePairScore.html#a4dc969c66252f5997bf60d55b6e412d8">
IMP::core::SphereDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SphereDistanceToSingletonScore.html#a6f3266db2f5c495a8452fab987fc5489">
IMP::core::SphereDistanceToSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SteepestDescent.html#abb6d9cb7004e61cb05ae84caf11f6a54">
IMP::core::SteepestDescent::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SubsetMover.html#ad45fb602417486a9c4d00273ebc4a5c8">
IMP::core::SubsetMover::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SurfaceDepthPairScore.html#a07d6044a79390cebc4c225c3c8490d31">
IMP::core::SurfaceDepthPairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SurfaceDistancePairScore.html#a2f3fd292828fb1ae19cb68500f70e534">
IMP::core::SurfaceDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SurfaceGeometry.html#ad43bc21bf2ee9998f7a1b23c4e207f6f">
IMP::core::SurfaceGeometry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SurfaceGeometryConstraint.html#ab4915114d15bc0d919608b224c78e9d7">
IMP::core::SurfaceGeometryConstraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SurfaceHeightPairScore.html#a06ed810c05154b46e212f7db48666e7b">
IMP::core::SurfaceHeightPairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SurfaceMover.html#a3116d0616d4707abfd25f90e4d033721">
IMP::core::SurfaceMover::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SurfaceSymmetryConstraint.html#a209c1f9c15b7f2a3bc80763c9d191306">
IMP::core::SurfaceSymmetryConstraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1SurfaceTetheredChain.html#a0433f663df86d092db28e9bf4fe88ac1">
IMP::core::SurfaceTetheredChain::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1TableRefiner.html#afca61fc552d1ee9756ac00ed8cc764d5">
IMP::core::TableRefiner::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1Transform.html#a007c746a37b4e596b0ddc603049127fa">
IMP::core::Transform::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1TransformationAndReflectionSymmetry.html#a789ac5a349e1263944ef41fde60db562">
IMP::core::TransformationAndReflectionSymmetry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1TransformationSymmetry.html#a1fa495b070db9b6f48c1437f6840c550">
IMP::core::TransformationSymmetry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1TransformationSymmetryMover.html#ae2092b52737d6c6a8fde7594fedd2808">
IMP::core::TransformationSymmetryMover::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1TransformedDistancePairScore.html#a007c32842ec648bc750e203776e26734">
IMP::core::TransformedDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1TripletConstraint.html#a2011ae7a62abdf8ed09ac95f767935a1">
IMP::core::TripletConstraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1TripletRestraint.html#a4e8176ce2184a32bfde6aae8e1e4644a">
IMP::core::TripletRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1TruncatedHarmonic.html#a68a74c6021573147fcf7c72c5656a107">
IMP::core::TruncatedHarmonic::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1TypedPairScore.html#a8b174071912103ee96a6ffafb911d70d">
IMP::core::TypedPairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1UnorderedTypePairPredicate.html#aa3e21bd26e87927cc6ce5f68aa95de40">
IMP::core::UnorderedTypePairPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1UnorderedTypeQuadPredicate.html#ad10325050a1e7e2e237426d8eeadac8f">
IMP::core::UnorderedTypeQuadPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1UnorderedTypeSingletonPredicate.html#a21ac8d5fd259ead441ddffe5fedf7fe1">
IMP::core::UnorderedTypeSingletonPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1UnorderedTypeTripletPredicate.html#a34f9d782f224ddc8f030fd4073e53281">
IMP::core::UnorderedTypeTripletPredicate::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1VolumeRestraint.html#a7bc7c93efeab803c5812f36321205fd7">
IMP::core::VolumeRestraint::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1WeightedDerivativesToRefined.html#a36e5d83d315bd9fad9c23f69bf134f7f">
IMP::core::WeightedDerivativesToRefined::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1WeightedSphereDistancePairScore.html#aa6bf84edfb2113223144de6efbc8f93d">
IMP::core::WeightedSphereDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1WeightedSum.html#aa58b2748eae1a5a064bb6d8e152bb7f8">
IMP::core::WeightedSum::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1WeightedSumOfExponential.html#a5c18c882f9705b5e6e3a52439a2bf67f">
IMP::core::WeightedSumOfExponential::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1WriteRestraintScoresOptimizerState.html#a582242a0cbc243e6bfda4bbd53126df1">
IMP::core::WriteRestraintScoresOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1XYZDerivativeGeometry.html#a83f65d81df4d0fc4217155874fd4756b">
IMP::core::XYZDerivativeGeometry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1XYZDerivativesGeometry.html#a8211176a4af860f7b65e27ed12ddc414">
IMP::core::XYZDerivativesGeometry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1XYZRGeometry.html#ae7fa779df0a74df48500f4987031ae50">
IMP::core::XYZRGeometry::get_version_info()</a>, <a href=
"classIMP_1_1core_1_1XYZRsGeometry.html#a0650c657b695aea88110b1a5e92deb47">
IMP::core::XYZRsGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1BoundingBoxGeometry.html#ab1561854d46d37507cb49f6e690ffd5a">
IMP::display::BoundingBoxGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1CylinderGeometry.html#ab877e01865e43b0ba4a79836b9d138c0">
IMP::display::CylinderGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1EllipsoidGeometry.html#a8c40ba28e4d2b366bee083105fc9a6b0">
IMP::display::EllipsoidGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1FilterGeometry.html#a26048eecd2a8077572774174fc905d0e">
IMP::display::FilterGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1GeometrySet.html#a4fbb9220e164472317e59561cd3f97c6">
IMP::display::GeometrySet::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1LabelGeometry.html#a5269044e07c148728e939422a0f3171b">
IMP::display::LabelGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1PlaneGeometry.html#a553ccf744e4cd46b4716f9e47ba62ad6">
IMP::display::PlaneGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1PointGeometry.html#a27c239c8079656be02589450a3af8c59">
IMP::display::PointGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1PolygonGeometry.html#ae5434a489fe8d57eb57a95ba3a985b98">
IMP::display::PolygonGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1PymolWriter.html#a1ab86bbbdc0d43cd012f38e4c27b5db3">
IMP::display::PymolWriter::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1ReferenceFrameGeometry.html#a70369d719c1e718b706abb37ab725f8d">
IMP::display::ReferenceFrameGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1RestraintGeometry.html#a75a82dfff5a2116e4b5b1cb15b0c63db">
IMP::display::RestraintGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1RestraintSetGeometry.html#ac99e71662d8c5afef2a5284e2ae52eb7">
IMP::display::RestraintSetGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1SegmentGeometry.html#a449c9f1d642367f7e97bc806f45ca295">
IMP::display::SegmentGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1SphereGeometry.html#a9be6c2bbee8a3732169c8c6261bfde9f">
IMP::display::SphereGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1SurfaceMeshGeometry.html#a2b12141cd8864304692985f49159d460">
IMP::display::SurfaceMeshGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1TriangleGeometry.html#a03038365144a02b2e623cfe0de614ab7">
IMP::display::TriangleGeometry::get_version_info()</a>, <a href=
"classIMP_1_1display_1_1WriteOptimizerState.html#a8e8e008599bd2aca6a12a05fb8bd28a0">
IMP::display::WriteOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1BranchAndBoundAssignmentsTable.html#a1b67cd7b1ea0ac0345ddc89910d19982">
IMP::domino::BranchAndBoundAssignmentsTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1BranchAndBoundSampler.html#ab159b04edbb47464bc1b5dd04d6cc5aa">
IMP::domino::BranchAndBoundSampler::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1CappedAssignmentContainer.html#ab0cce62a8b3d4d861f3c295e2eec4083">
IMP::domino::CappedAssignmentContainer::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1CompoundStates.html#a28510481a50f15188311c6f0f49c6c4b">
IMP::domino::CompoundStates::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1DependencyScoreState.html#a8f65ea5bfa96f5fa0fd592209efe86cd">
IMP::domino::DependencyScoreState::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1DominoSampler.html#a0f0375aedf78281843923fb3d3bf410e">
IMP::domino::DominoSampler::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1EqualitySubsetFilterTable.html#a5505d4998c1f85a00f9d0fb1d902d857">
IMP::domino::EqualitySubsetFilterTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1EquivalenceAndExclusionSubsetFilterTable.html#ae81d09c7cfcbb99f7b087a36487b6993">
IMP::domino::EquivalenceAndExclusionSubsetFilterTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1EquivalenceSubsetFilterTable.html#ad3faf1a55fd646d87ebc8b3ed8b57511">
IMP::domino::EquivalenceSubsetFilterTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1ExclusionSubsetFilterTable.html#ad0af365158a9078075582f6cf09a1d4e">
IMP::domino::ExclusionSubsetFilterTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1HeapAssignmentContainer.html#a184ded6266323d74b270a190a22b3542">
IMP::domino::HeapAssignmentContainer::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1IndexStates.html#af190ce666f6bf692fa61bd56082566aa">
IMP::domino::IndexStates::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1ListAssignmentContainer.html#a37c5e9043bcf2239f443464c993ada98">
IMP::domino::ListAssignmentContainer::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1ListAssignmentsTable.html#a6b50f788ae73adfc5e6d087ff41112b1">
IMP::domino::ListAssignmentsTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1ListSubsetFilterTable.html#a63aee3737f1e499254884aacd15043ed">
IMP::domino::ListSubsetFilterTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1MinimumRestraintScoreSubsetFilterTable.html#a25e4831909f7956fc542f03866f015a3">
IMP::domino::MinimumRestraintScoreSubsetFilterTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1NestedRigidBodyStates.html#a10d18bbfc70f81967d6ecb8dc67a5f6e">
IMP::domino::NestedRigidBodyStates::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1PackedAssignmentContainer.html#a7393039aebcc75ac81a655e61cb0275c">
IMP::domino::PackedAssignmentContainer::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1PairListSubsetFilterTable.html#a1489a5b703643cca2fc5c3d5e7ebb8f2">
IMP::domino::PairListSubsetFilterTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1ParticleStatesTable.html#a7ac05376a0e2fe5cb77e69194b39bf8f">
IMP::domino::ParticleStatesTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1PermutationStates.html#ad17aa8c5ffbc5b27f2d1f8992876db6f">
IMP::domino::PermutationStates::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1ProbabilisticSubsetFilterTable.html#aef8fc2d617f69295302564acf98e81a3">
IMP::domino::ProbabilisticSubsetFilterTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1RangeViewAssignmentContainer.html#a6ffd27ee4fa77201764b6ab06a84db6b">
IMP::domino::RangeViewAssignmentContainer::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1ReadAssignmentContainer.html#af6d81ddf74b517a79e8cc490d111d974">
IMP::domino::ReadAssignmentContainer::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1ReadHDF5AssignmentContainer.html#aec70176d2034efeefa74a7c1e7e9e8fe">
IMP::domino::ReadHDF5AssignmentContainer::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1RecursiveAssignmentsTable.html#ab294857ae7d4ab3a62f465aa9a9e2e7a">
IMP::domino::RecursiveAssignmentsTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1RecursiveStates.html#aac4805b4878371c3d50eab62ba2032b9">
IMP::domino::RecursiveStates::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1RestraintCache.html#a9e3f7f70db01116e987731e1decb6f2d">
IMP::domino::RestraintCache::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1RestraintScoreSubsetFilterTable.html#a39ec4f259a22aa4e007b6e5ded559d95">
IMP::domino::RestraintScoreSubsetFilterTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1RigidBodyStates.html#aca4d62b03041be545a5fa4b6dc38b77d">
IMP::domino::RigidBodyStates::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1SampleAssignmentContainer.html#a92b3059258a3107aea479e49dd082da7">
IMP::domino::SampleAssignmentContainer::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1SimpleAssignmentsTable.html#a3ff82be4ed1322e31ac3220d30139e63">
IMP::domino::SimpleAssignmentsTable::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1WriteAssignmentContainer.html#ad096f5e5042dad3c0b3d15faeb1f572a">
IMP::domino::WriteAssignmentContainer::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1WriteHDF5AssignmentContainer.html#abaa6eff2b119fe51d6be440c6bf47be7">
IMP::domino::WriteHDF5AssignmentContainer::get_version_info()</a>, <a href=
"classIMP_1_1domino_1_1XYZStates.html#abd889381f634356b50ad25d33ee40754">
IMP::domino::XYZStates::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1CollisionCrossSection.html#ac8d5a587ef9b15387f6f2967d29f5070">
IMP::em2d::CollisionCrossSection::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1DistanceFilter.html#a301244404bd0635b47d60f435b303031">
IMP::em2d::DistanceFilter::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1DistanceFilterTable.html#a6b26322c1a49cd4d6e540a3d5439c560">
IMP::em2d::DistanceFilterTable::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1DummyRestraint.html#afe88a476bbfc72046f4bb337f1ca9057">
IMP::em2d::DummyRestraint::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1Em2DRestraint.html#a23e70b1e4bbcee93108faae94e0c1049">
IMP::em2d::Em2DRestraint::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1Fine2DRegistrationRestraint.html#ab445f80944126d94d9801b9debb3ca43">
IMP::em2d::Fine2DRegistrationRestraint::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1GridStates.html#aea8325312c2c4928a785130330546f7a">
IMP::em2d::GridStates::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1Image.html#ae86be5ef13d6c5af7442a8fd95562d61">
IMP::em2d::Image::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1ImageReaderWriter.html#a2fab5ce7a903baaf33eb35cfd96352dd">
IMP::em2d::ImageReaderWriter::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1JPGImageReaderWriter.html#ab991c836739eddbe66b17cce41620a56">
IMP::em2d::JPGImageReaderWriter::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1PCAFitRestraint.html#ab056854f96d731f2bdba752893369394">
IMP::em2d::PCAFitRestraint::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1ParticlesDummyRestraint.html#a1cad2190ac66407564df1a154de27f1e">
IMP::em2d::ParticlesDummyRestraint::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1ProjectionFinder.html#a2bf355d677391a2950075ed3bb918344">
IMP::em2d::ProjectionFinder::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1ProjectionParametersScoreState.html#a1681c8c9598e9f8f30e430565b2a3dc8">
IMP::em2d::ProjectionParametersScoreState::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1ProjectionStates.html#ad2627e6e0f69f72ff7371af772f842d9">
IMP::em2d::ProjectionStates::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1RelativePositionMover.html#aa0295fab0675fe084da34ea245925aa5">
IMP::em2d::RelativePositionMover::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1RigidBodiesImageFitRestraint.html#a78b78d4ebc9e108b19af04686a9df31f">
IMP::em2d::RigidBodiesImageFitRestraint::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1ScoreFunction.html#ae5b1038c2e06fed6865bd9aaff88931b">
IMP::em2d::ScoreFunction::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1SpiderImageReaderWriter.html#acbc38a5acac9cc734f7afd9c656da06b">
IMP::em2d::SpiderImageReaderWriter::get_version_info()</a>, <a href=
"classIMP_1_1em2d_1_1TIFFImageReaderWriter.html#a86d682d2cd70b84d237496dad47b8e0c">
IMP::em2d::TIFFImageReaderWriter::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1CoarseCC.html#ad11333a426a2fac95a04ddb75882e8dc">
IMP::em::CoarseCC::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1CoarseCCatIntervals.html#a72e4992d7556f0c6043be29dd1b7bdf5">
IMP::em::CoarseCCatIntervals::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1DensityFillingRestraint.html#a5e0b178290142e24357ff891b5fd01b6">
IMP::em::DensityFillingRestraint::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#a6bd9e3e58cb07b27309a356cf417b97c">
IMP::em::DensityMap::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1EMReaderWriter.html#afee2a75e9dbf84b87142e28560f464e8">
IMP::em::EMReaderWriter::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1EnvelopeFitRestraint.html#af14c97c3ab675421f195a26dae2bedb4">
IMP::em::EnvelopeFitRestraint::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1EnvelopePenetrationRestraint.html#a7eb087d4c5cd63e6246ce3db923fb876">
IMP::em::EnvelopePenetrationRestraint::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1EnvelopeScore.html#aacd864d36a39d4a06e1eff5a5e060f20">
IMP::em::EnvelopeScore::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1FitRestraint.html#aeccfca57bb7f0df28df9a66beaf0bb53">
IMP::em::FitRestraint::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1FitRestraintBayesEM3D.html#a688255e0186f8816e457b908931ad97f">
IMP::em::FitRestraintBayesEM3D::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1HighDensityEmbedding.html#a1f133d4e834e15b46817bb7c84d49e82">
IMP::em::HighDensityEmbedding::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1MRCReaderWriter.html#a24433527552b9c771ce5350d06a451c2">
IMP::em::MRCReaderWriter::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1MapReaderWriter.html#a6480bdb20890e607bf666d0605399e06">
IMP::em::MapReaderWriter::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1PCAAligner.html#ae85ecadda15895e85c7299877aeacf25">
IMP::em::PCAAligner::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1PCAFitRestraint.html#a00fb6d8df1e1f0ecacf78a619313efee">
IMP::em::PCAFitRestraint::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1SpiderMapReaderWriter.html#a457fb8d8e21f801570712b41cd572e86">
IMP::em::SpiderMapReaderWriter::get_version_info()</a>, <a href=
"classIMP_1_1em_1_1XplorReaderWriter.html#a1bb049d205092a6c72eff1cddcadf7a1">
IMP::em::XplorReaderWriter::get_version_info()</a>, <a href=
"classIMP_1_1example_1_1ExampleComplexRestraint.html#a48d7a484217f887e0e53372fb2ee22e2">
IMP::example::ExampleComplexRestraint::get_version_info()</a>, <a href=
"classIMP_1_1example_1_1ExampleConstraint.html#af9f07eff80db07ff7bd4b0698e317c1b">
IMP::example::ExampleConstraint::get_version_info()</a>, <a href=
"classIMP_1_1example_1_1ExampleObject.html#aa3cedc6ecd24de913d29917e0bfd9fe9">
IMP::example::ExampleObject::get_version_info()</a>, <a href=
"classIMP_1_1example_1_1ExamplePairScore.html#a709b494fa98bb3698bcac8bf7c3bf348">
IMP::example::ExamplePairScore::get_version_info()</a>, <a href=
"classIMP_1_1example_1_1ExampleRestraint.html#a7d5b74e6d5e9b183e7fa13959288a4cb">
IMP::example::ExampleRestraint::get_version_info()</a>, <a href=
"classIMP_1_1example_1_1ExampleSingletonModifier.html#a774d11d926ff79c242c0a929e48e971a">
IMP::example::ExampleSingletonModifier::get_version_info()</a>, <a href=
"classIMP_1_1example_1_1ExampleSubsetFilterTable.html#a9641033fe68b3a679b400b4c80fa4496">
IMP::example::ExampleSubsetFilterTable::get_version_info()</a>, <a href=
"classIMP_1_1example_1_1ExampleUnaryFunction.html#a26a0cc5adc3361bed722642fb48fe5f6">
IMP::example::ExampleUnaryFunction::get_version_info()</a>, <a href=
"classIMP_1_1gsl_1_1ConjugateGradients.html#ab16d3583046bb3327cc6edf99a791924">
IMP::gsl::ConjugateGradients::get_version_info()</a>, <a href=
"classIMP_1_1gsl_1_1QuasiNewton.html#a323a73d05e9ff32d760165d7691ab37c">
IMP::gsl::QuasiNewton::get_version_info()</a>, <a href=
"classIMP_1_1gsl_1_1Simplex.html#a0fc89c91337b7f340d8c21e4b46b6d14">
IMP::gsl::Simplex::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1AmbiguousNOERestraint.html#a01d95e6879e83a7b3f587d4df1065708">
IMP::isd::AmbiguousNOERestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1AmbiguousRestraint.html#aaaf692080f57d04a20156712d75f1bcd">
IMP::isd::AmbiguousRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1AtomicCrossLinkMSRestraint.html#abd6955ce9d202bcf80832b3a7a0ce7df">
IMP::isd::AtomicCrossLinkMSRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1Covariance1DFunction.html#a7e01f8978fc08da589831dca94dd899c">
IMP::isd::Covariance1DFunction::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1CrossLinkData.html#a6b6e9ec9513549a0baad016f96505475">
IMP::isd::CrossLinkData::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1CrossLinkMSRestraint.html#a0399dabf05f67c9207b5d519b617e474">
IMP::isd::CrossLinkMSRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1CysteineCrossLinkData.html#abc61f1cdf897fce86ab29632d846c5ff">
IMP::isd::CysteineCrossLinkData::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1CysteineCrossLinkRestraint.html#aec633b4b268ea2e8ecd665861c8e2815">
IMP::isd::CysteineCrossLinkRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1Distribution.html#aa8eadc0cd09be26f31f94842ab4cb000">
IMP::isd::Distribution::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1FNormal.html#ad4075077c93bc5c91362ded2283ab43b">
IMP::isd::FNormal::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1FStudentT.html#a4e566e83a2cacec99d13daafd81781e8">
IMP::isd::FStudentT::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1FretData.html#a1686ddf6b866a67e1d9f194a6c00a5a8">
IMP::isd::FretData::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1FretRestraint.html#a4625f9c9964c9bbebea00ebb1fc9b5a3">
IMP::isd::FretRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1GammaPrior.html#a2bf65702c1824507b84bd7d39938504a">
IMP::isd::GammaPrior::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1GaussianAnchorEMRestraint.html#ae65089b80ee1ae2e6b4268f3a745dffb">
IMP::isd::GaussianAnchorEMRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1GaussianEMRestraint.html#ab297ce7ad9bb7a6a1a93b60f60cd9dfa">
IMP::isd::GaussianEMRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1GaussianProcessInterpolation.html#a95a80f43de11269e5e1535904c2a8e74">
IMP::isd::GaussianProcessInterpolation::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1GaussianProcessInterpolationRestraint.html#aeeb842fbd9e554ed8d9a91aac243df29">
IMP::isd::GaussianProcessInterpolationRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1GaussianRestraint.html#a0de87f3f0cfd8f556c1cef3fe19094de">
IMP::isd::GaussianRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1GeneralizedGuinierPorodFunction.html#a59400c47c9c542b07c2a170c26af2580">
IMP::isd::GeneralizedGuinierPorodFunction::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1HybridMonteCarlo.html#a365d633c2dd1d6107e0b6f0f13c986b9">
IMP::isd::HybridMonteCarlo::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1ISDRestraint.html#a61785efe0385e1ff79e8dbacb7af560f">
IMP::isd::ISDRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1JeffreysRestraint.html#ad5365a14df9ef96a1cfa5c858c339ed3">
IMP::isd::JeffreysRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1Linear1DFunction.html#a44452ac3079e8b0605d20ca4de28ae43">
IMP::isd::Linear1DFunction::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1LogWrapper.html#a604070e673ea3abe68bc2ed78a17ba47">
IMP::isd::LogWrapper::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1LognormalAmbiguousRestraint.html#af3ea86af490ed36b50dc30e18b112655">
IMP::isd::LognormalAmbiguousRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1LognormalRestraint.html#aeaf2f200d15ceb22b9bf7fdccf08e17e">
IMP::isd::LognormalRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1MarginalHBondRestraint.html#af8688edcfd71628ea1184a6c11f6c344">
IMP::isd::MarginalHBondRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1MarginalNOERestraint.html#a7b3739d0ff07239f18ba511fec549a08">
IMP::isd::MarginalNOERestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1MolecularDynamicsMover.html#a5215af02840d4cc3523403fd8b6d6f0c">
IMP::isd::MolecularDynamicsMover::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1MultivariateFNormalSufficient.html#a9fb2a390d1ddea1c82aa4174bb786e11">
IMP::isd::MultivariateFNormalSufficient::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1NOERestraint.html#a356b70d44fd04533c8d097359f924148">
IMP::isd::NOERestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1NormalSigmaPCRestraint.html#ab0171c798185ce5ef0f5b98947012604">
IMP::isd::NormalSigmaPCRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1OneDimensionalDistribution.html#a034846f825bd85d62388c87b1623aa36">
IMP::isd::OneDimensionalDistribution::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1OneDimensionalSufficientDistribution.html#a97465cc3e4e6a6e9b91ef5da5351cecd">
IMP::isd::OneDimensionalSufficientDistribution::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1PenalizedComplexityPrior.html#aaabbb78e96e757a7124c7de4645e352e">
IMP::isd::PenalizedComplexityPrior::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1RepulsiveDistancePairScore.html#a71f0e1ae9b56a863b3c460f10c71a8a8">
IMP::isd::RepulsiveDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1StudentTRestraint.html#ac651ef5dd1773d1c53f6e5f5fc232600">
IMP::isd::StudentTRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1TALOSRestraint.html#ad746508d08c72f5fcd22dea0d18d4229">
IMP::isd::TALOSRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1UniformPrior.html#a0dc13cb094420f12679ad3270de083d1">
IMP::isd::UniformPrior::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1WeightMover.html#a69029359ef1e63397853d13c12aed092">
IMP::isd::WeightMover::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1WeightRestraint.html#adc059fc6d1be046bdea9ea3739503f3a">
IMP::isd::WeightRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1vonMises.html#a7852cb6e6af62e224be5d2aebb71cb51">
IMP::isd::vonMises::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1vonMisesKappaConjugateRestraint.html#a7c2684430d2b20159c0fe70d6e63c11b">
IMP::isd::vonMisesKappaConjugateRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1vonMisesKappaJeffreysRestraint.html#a4775e6869c5b31109215f36867aaf2c5">
IMP::isd::vonMisesKappaJeffreysRestraint::get_version_info()</a>, <a href=
"classIMP_1_1isd_1_1vonMisesSufficient.html#a7be089a536d27ef5ac51c551fc09bb60">
IMP::isd::vonMisesSufficient::get_version_info()</a>, <a href=
"classIMP_1_1kinematics_1_1DOF.html#a572f6719d68cd24935bee5f48f70cab9">
IMP::kinematics::DOF::get_version_info()</a>, <a href=
"classIMP_1_1kinematics_1_1DOFsSampler.html#a07984f93c14deb7e209b9c5435a4a494">
IMP::kinematics::DOFsSampler::get_version_info()</a>, <a href=
"classIMP_1_1kinematics_1_1DihedralMover.html#ae668540e824ecfb186c2cf26be68bf9d">
IMP::kinematics::DihedralMover::get_version_info()</a>, <a href=
"classIMP_1_1kinematics_1_1DirectionalDOF.html#a99d6ba4b0fdab41cbdc93bd72ee6a003">
IMP::kinematics::DirectionalDOF::get_version_info()</a>, <a href=
"classIMP_1_1kinematics_1_1Joint.html#a5a856ff5024666a577c30a24783597cf">
IMP::kinematics::Joint::get_version_info()</a>, <a href=
"classIMP_1_1kinematics_1_1KinematicForest.html#ab3e1cdbdd796cd76ad90caf4f4838eca">
IMP::kinematics::KinematicForest::get_version_info()</a>, <a href=
"classIMP_1_1kinematics_1_1KinematicForestScoreState.html#a14fd58c7ee0bba21356c29fd2bdfe5fb">
IMP::kinematics::KinematicForestScoreState::get_version_info()</a>, <a href=
"classIMP_1_1kinematics_1_1LocalPlanner.html#ade4b6bf0d31c2cc35b684dba08e20d58">
IMP::kinematics::LocalPlanner::get_version_info()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#aa698611f873e2100890989c68523a758">
IMP::kinematics::ProteinKinematics::get_version_info()</a>, <a href=
"classIMP_1_1kinematics_1_1RRT.html#ae24a97e020062a20ba6893039df085bd">
IMP::kinematics::RRT::get_version_info()</a>, <a href=
"classIMP_1_1kinematics_1_1RevoluteJointMover.html#a13e56e0bd6038c9f5a841c34ccb67e56">
IMP::kinematics::RevoluteJointMover::get_version_info()</a>, <a href=
"classIMP_1_1kmeans_1_1KMeans.html#aa5003160a3d637fb882a676ddef7badd">
IMP::kmeans::KMeans::get_version_info()</a>, <a href=
"classIMP_1_1misc_1_1CommonEndpointPairFilter.html#a1187eca8166e7d576b427f72c75965cb">
IMP::misc::CommonEndpointPairFilter::get_version_info()</a>, <a href=
"classIMP_1_1misc_1_1DecayPairContainerOptimizerState.html#abca5433f222411c304eee29c685bd84e">
IMP::misc::DecayPairContainerOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1misc_1_1FreelyJointedChain.html#a93a13727fdff750753178993ce5354d7">
IMP::misc::FreelyJointedChain::get_version_info()</a>, <a href=
"classIMP_1_1misc_1_1LogPairScore.html#aa996b12e993e7279162eb978df17b1ca">
IMP::misc::LogPairScore::get_version_info()</a>, <a href=
"classIMP_1_1misc_1_1LowestRefinedPairScore.html#aa574745b146186d604948c75d12a9c16">
IMP::misc::LowestRefinedPairScore::get_version_info()</a>, <a href=
"classIMP_1_1misc_1_1MetricClosePairsFinder.html#a3824d26183fd519143a188597b4972c4">
IMP::misc::MetricClosePairsFinder::get_version_info()</a>, <a href=
"classIMP_1_1misc_1_1SoftCylinderPairScore.html#a09609478358bd638b6b577abb6f58d3b">
IMP::misc::SoftCylinderPairScore::get_version_info()</a>, <a href=
"classIMP_1_1misc_1_1StateAdaptor.html#a99bfea6564628a41de1c1291c028e714">
IMP::misc::StateAdaptor::get_version_info()</a>, <a href=
"classIMP_1_1misc_1_1WormLikeChain.html#a0bb1baa161a987dfa3b5d973702c16e4">
IMP::misc::WormLikeChain::get_version_info()</a>, <a href=
"classIMP_1_1mpi_1_1ReplicaExchange.html#a4122ee8e0ad9603dfe7b9bd010230ba3">
IMP::mpi::ReplicaExchange::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1AssemblyHeader.html#abca7058237dd33019c0664a0dfbf15f3">
IMP::multifit::AssemblyHeader::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1ComplementarityRestraint.html#a9eada75291c802a1817b52cf7b8f14a2">
IMP::multifit::ComplementarityRestraint::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1ComponentHeader.html#aceae039ef23bafa2a58922b60f466a2d">
IMP::multifit::ComponentHeader::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1DensityDataPoints.html#a0e2709c6dad6c1327b7aa9d81ce372a3">IMP::multifit::DensityDataPoints::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1DummyRestraint.html#ae27e0f5729f90fb535f171d0eb09426c">
IMP::multifit::DummyRestraint::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1Ensemble.html#ac085882708b812ca3b9fac986a412ba6">
IMP::multifit::Ensemble::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1FFTFitting.html#af87478931786db90c62f883a9094d2a6">
IMP::multifit::FFTFitting::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1FFTFittingOutput.html#aebef70c1e6f0c6057188726b6a2ab7d2">
IMP::multifit::FFTFittingOutput::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1FittingStates.html#aea01458962fcff13b601a4f5a86c4c2c">
IMP::multifit::FittingStates::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1ProbabilisticAnchorGraph.html#a34fd6c9f0401dbe80ac880887a2c5bf4">
IMP::multifit::ProbabilisticAnchorGraph::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1ProteomicsData.html#a81bf1d85acec770424289f0ef685ef04">
IMP::multifit::ProteomicsData::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1ProteomicsEMAlignmentAtomic.html#a67ae50449091a7d3a386a827c8a2bcde">
IMP::multifit::ProteomicsEMAlignmentAtomic::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1RadiusOfGyrationRestraint.html#ab71d7aa9c35fe535d447f8a875c2be87">
IMP::multifit::RadiusOfGyrationRestraint::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1RigidLeavesRefiner.html#a28c7f8da208ad2fbd1aaf3968439e298">
IMP::multifit::RigidLeavesRefiner::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1SettingsData.html#a78fbcbd77bb17b061c959fefc75ceac0">
IMP::multifit::SettingsData::get_version_info()</a>, <a href=
"classIMP_1_1multifit_1_1WeightedExcludedVolumeRestraint.html#ac454229ee43f144f616e38fc4e0998c0">
IMP::multifit::WeightedExcludedVolumeRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1AssemblySymmetryByDihedralRestraint.html#a75f2a1efea8a84969bb5f2bbce394c04">
IMP::npc::AssemblySymmetryByDihedralRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1AssemblySymmetryByDistanceRestraint.html#a3935f31f61148f7991183b213e79e1d2">
IMP::npc::AssemblySymmetryByDistanceRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1CompositeRestraint.html#a7af1dd12194bc5a681d3db2418476b87">
IMP::npc::CompositeRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1MembraneExclusionRestraint.html#ac201b808c1020a63a934beaf34088a05">
IMP::npc::MembraneExclusionRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1MembraneSurfaceLocationConditionalRestraint.html#a54879a43f00ed52c63bed193dfbe99e6">
IMP::npc::MembraneSurfaceLocationConditionalRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1MembraneSurfaceLocationRestraint.html#a21e9a652b03f7ba42b666a12c6d3498c">
IMP::npc::MembraneSurfaceLocationRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1MinimumSphereDistancePairScore.html#a2ecd019851688965e500b0f7178bfe2a">
IMP::npc::MinimumSphereDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1PerinuclearVolumeLocationRestraint.html#afaae80b676652aeb9932749e23dc68cd">
IMP::npc::PerinuclearVolumeLocationRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1PoreSideVolumeLocationRestraint.html#a05e01921579ba39d3ea85d9f97cf3be1">
IMP::npc::PoreSideVolumeLocationRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1ProteinChainRestraint.html#a2f1832413be25bcf6ad7e878f8141b67">
IMP::npc::ProteinChainRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1ProteinContactRestraint.html#aa94bb06223de35d0b5535ac24315d2e8">
IMP::npc::ProteinContactRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1ProteinProximityRestraint.html#ae3d1dc8c1d86ad5bed75b726c155fa8b">
IMP::npc::ProteinProximityRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1XYRadialPositionLowerRestraint.html#a951a499753a13b0bd5e7123882a69908">
IMP::npc::XYRadialPositionLowerRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1XYRadialPositionRestraint.html#a1d869b081610fb74d8fae96c9dccb701">
IMP::npc::XYRadialPositionRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1XYRadialPositionUpperRestraint.html#a9c2d9040a2f39b20ed01a3df179a51ae">
IMP::npc::XYRadialPositionUpperRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1YAxialPositionLowerRestraint.html#a7230ba87aaac380fc333ca013cdc7a37">
IMP::npc::YAxialPositionLowerRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1YAxialPositionRestraint.html#a938029452001483abcce9f9707fe9822">
IMP::npc::YAxialPositionRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1YAxialPositionUpperRestraint.html#a31db0b6e8279b76aac48d5d777ab3abd">
IMP::npc::YAxialPositionUpperRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1ZAxialPositionLowerRestraint.html#a3d46a0c92577a306cfce4bba2314ac6f">
IMP::npc::ZAxialPositionLowerRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1ZAxialPositionRestraint.html#a6ffce6bc4a649a179230a0dd6443bcea">
IMP::npc::ZAxialPositionRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npc_1_1ZAxialPositionUpperRestraint.html#adb27665374034d0645f7e5a6b2286bd0">
IMP::npc::ZAxialPositionUpperRestraint::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1AnchorToCylidnricalPorePairScore.html#a629b2fa560e9719dff2c8b556348a6af">
IMP::npctransport::AnchorToCylidnricalPorePairScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1BipartitePairsStatisticsOptimizerState.html#a923c597f04aa9ba91fec82db5dab0206">
IMP::npctransport::BipartitePairsStatisticsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1BodyStatisticsOptimizerState.html#af9fb22222f0fb5e1ff6c0a87f483da0c">
IMP::npctransport::BodyStatisticsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1ChainStatisticsOptimizerState.html#a3ac63949e6fc10d2cf1e87ad798bef84">
IMP::npctransport::ChainStatisticsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1ExcludeZRangeSingletonScore.html#ae2d73efcdd32c315edc4cd8f420b78c7">
IMP::npctransport::ExcludeZRangeSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1FGChain.html#a00da50a36cbebc397d8ec8dd953c70e9">
IMP::npctransport::FGChain::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1FunctorLinearInteractionPairScore.html#ad202db0d2a6c80b298977acfa9661630">
IMP::npctransport::FunctorLinearInteractionPairScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1FunctorLinearSoftSpherePairScore.html#a1d9a4ceeab52a54697226779480598d4">
IMP::npctransport::FunctorLinearSoftSpherePairScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1GlobalStatisticsOptimizerState.html#a122e3217c2468cc51b05e05a656f2d1f">
IMP::npctransport::GlobalStatisticsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1HarmonicSpringSingletonScore.html#a7469daa658130d9066994683e01ca665">
IMP::npctransport::HarmonicSpringSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1HarmonicWellPairScore.html#ab3aca0b4db89370e510bc7f077e7c80a">
IMP::npctransport::HarmonicWellPairScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1LinearInteractionPairScore.html#a5b52c969a9b754e9da2f73a752963b8d">
IMP::npctransport::LinearInteractionPairScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1LinearSoftSpherePairScore.html#aaa7ebd766541b354f9ad6faf55471498">
IMP::npctransport::LinearSoftSpherePairScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1LinearWellPairScore.html#aea2e9f14a03e9f12f76f8c661f250d24">
IMP::npctransport::LinearWellPairScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1ParticleFactory.html#ac81a2a8b4cbcdf6de5382ec3c85d894f">
IMP::npctransport::ParticleFactory::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1ParticleTransportStatisticsOptimizerState.html#a6ae0a264b32a9b9722a3c716f8ec91d4">
IMP::npctransport::ParticleTransportStatisticsOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#a73fe52320454075bb33d94739a0071da">
IMP::npctransport::Scoring::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#a2b1aa6511d64f6ab2b25433a9d05e23a">
IMP::npctransport::SimulationData::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1SitesGeometry.html#a7c7233ef2dd64b73429c34e30e405103">
IMP::npctransport::SitesGeometry::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1SitesPairScore.html#aab1ae4041c225f2a71e69ebb382bba61">
IMP::npctransport::SitesPairScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1SlabWithCylindricalPorePairScore.html#a07156ba43a2d8365eb965a001b34549a">
IMP::npctransport::SlabWithCylindricalPorePairScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1SlabWithCylindricalPoreWireGeometry.html#a4dcce1fb35d1a4bd22fd2190efdf1261">
IMP::npctransport::SlabWithCylindricalPoreWireGeometry::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1SlabWithToroidalPorePairScore.html#a178d57c7bc81be0efe36df52a99f440f">
IMP::npctransport::SlabWithToroidalPorePairScore::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1SlabWithToroidalPoreWireGeometry.html#a08c34c9e014aaa43e47670193eb06abc">
IMP::npctransport::SlabWithToroidalPoreWireGeometry::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1Statistics.html#a416bf9832f0a59507b01ed184c6c62fb">
IMP::npctransport::Statistics::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1TypedSitesGeometry.html#a8ea6218e3394b29ca9bcadd301073337">
IMP::npctransport::TypedSitesGeometry::get_version_info()</a>, <a href=
"classIMP_1_1npctransport_1_1ZBiasSingletonScore.html#a9a54084e4ac92baa1bc6bee69b59b80b">
IMP::npctransport::ZBiasSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1pmi1_1_1CompositeRestraint.html#aecb73fb3b7802a40b63f9ae4971a0157">
IMP::pmi1::CompositeRestraint::get_version_info()</a>, <a href=
"classIMP_1_1pmi1_1_1InternalCoordinatesConstraint.html#a62b64afb3dffacb66f7eda3b632dd82a">
IMP::pmi1::InternalCoordinatesConstraint::get_version_info()</a>, <a href=
"classIMP_1_1pmi1_1_1MembraneRestraint.html#ab434c687fbeddb604be200bd38fd943d">
IMP::pmi1::MembraneRestraint::get_version_info()</a>, <a href=
"classIMP_1_1pmi1_1_1SigmoidRestraintSphere.html#a524bbd17a45ee0bef886f966af6c20eb">
IMP::pmi1::SigmoidRestraintSphere::get_version_info()</a>, <a href=
"classIMP_1_1pmi1_1_1TransformMover.html#a2a7f0f886cc809bbb95be86cd79e6f30">
IMP::pmi1::TransformMover::get_version_info()</a>, <a href=
"classIMP_1_1pmi_1_1CompositeRestraint.html#a004b142b517140c5ba8b7494954765c7">
IMP::pmi::CompositeRestraint::get_version_info()</a>, <a href=
"classIMP_1_1pmi_1_1MembraneRestraint.html#a862e6ea430aa20f9f85d5277f1785cd4">
IMP::pmi::MembraneRestraint::get_version_info()</a>, <a href=
"classIMP_1_1pmi_1_1TransformMover.html#a620aff297570c9a1036c1970c5ba3749">
IMP::pmi::TransformMover::get_version_info()</a>, <a href=
"classIMP_1_1rmf_1_1HierarchyLoadLink.html#a5f27a75291c356f448a8d2fc498b2b12">
IMP::rmf::HierarchyLoadLink::get_version_info()</a>, <a href=
"classIMP_1_1rmf_1_1HierarchySaveLink.html#aafed8ba53f3a73f392088cd712e38a7e">
IMP::rmf::HierarchySaveLink::get_version_info()</a>, <a href=
"classIMP_1_1rmf_1_1SaveOptimizerState.html#a0fce1ca1b9965b0be20b5d322456c8e4">
IMP::rmf::SaveOptimizerState::get_version_info()</a>, <a href=
"classIMP_1_1rotamer_1_1RotamerCalculator.html#a480f27e77b57e7121a25eb7e23e0a231">
IMP::rotamer::RotamerCalculator::get_version_info()</a>, <a href=
"classIMP_1_1rotamer_1_1RotamerLibrary.html#a9d07f9ebd75d76cee2a334d4a3f1ae2b">
IMP::rotamer::RotamerLibrary::get_version_info()</a>, <a href=
"classIMP_1_1saxs_1_1ChiScore.html#a392b39fbd0296c8526abc785402d6896">
IMP::saxs::ChiScore::get_version_info()</a>, <a href=
"classIMP_1_1saxs_1_1ChiScoreLog.html#a29cd1790917f18e5931d9145dbb480f9">
IMP::saxs::ChiScoreLog::get_version_info()</a>, <a href=
"classIMP_1_1saxs_1_1Profile.html#aed58e24036c6d46d97e25b01435a0105">
IMP::saxs::Profile::get_version_info()</a>, <a href=
"classIMP_1_1saxs_1_1RadiusOfGyrationRestraint.html#a67a0344f5a691851881ad79e2559beff">
IMP::saxs::RadiusOfGyrationRestraint::get_version_info()</a>, <a href=
"classIMP_1_1saxs_1_1RatioVolatilityScore.html#af371eaa5a4ca74ce20478224d5e5d7a9">
IMP::saxs::RatioVolatilityScore::get_version_info()</a>, <a href=
"classIMP_1_1saxs_1_1Restraint.html#a0de3d42b9067f176dfa52dee1ab7de61">
IMP::saxs::Restraint::get_version_info()</a>, <a href=
"classIMP_1_1saxs_1_1RigidBodiesProfileHandler.html#afe1eaedcf4c2e77bc972a21b39f0df2c">
IMP::saxs::RigidBodiesProfileHandler::get_version_info()</a>, <a href=
"classIMP_1_1score__functor_1_1DistancePairScore.html#a15f220c22f65c069b0b627c0b769987f">
IMP::score_functor::DistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1score__functor_1_1DistancePairScoreWithCache.html#a1b8ca9e215c62eb3e83c208740a61dfb">
IMP::score_functor::DistancePairScoreWithCache::get_version_info()</a>, <a href=
"classIMP_1_1score__functor_1_1ScoreUnaryFunction.html#a013a322433074ff28e2b0beb0a3e436e">
IMP::score_functor::ScoreUnaryFunction::get_version_info()</a>, <a href=
"classIMP_1_1score__functor_1_1SurfaceDistancePairScore.html#a483225479c24044fb07b6b193d5057e5">
IMP::score_functor::SurfaceDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1AttributeDistancePairScore.html#a69cd5242e388bc90c7e6defa02dbc0df">
IMP::spb::AttributeDistancePairScore::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1BoxedMover.html#ab670b384bced9b5984711345b18d6f88">
IMP::spb::BoxedMover::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1CellMover.html#a27a6bfb16c58937f5eff7c0f80c9d4ab">
IMP::spb::CellMover::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1ChiSquareMetric.html#a93d195a47bc0bedbd0a5909c789521d0">
IMP::spb::ChiSquareMetric::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1ContactMapMetric.html#a947d7d91b613bba8d76fe3dc274c16b7">
IMP::spb::ContactMapMetric::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1DiameterRgyrRestraint.html#ab57aec08af553f691265d5649a39c64f">
IMP::spb::DiameterRgyrRestraint::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1DistanceRMSDMetric.html#a615bbb1840265d2230617fc108a36617">
IMP::spb::DistanceRMSDMetric::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1DistanceTerminiRestraint.html#aac93e637324ead00981d75a5dbca1bd6">
IMP::spb::DistanceTerminiRestraint::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1EM2DRestraint.html#a192b335c499c0c5334ef1a732c793aa7">
IMP::spb::EM2DRestraint::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1Gaussian.html#a2e98a6d61f165568abb16f664d015bbf">
IMP::spb::Gaussian::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1KinkPairScore.html#aa2ef5cd528c306695b6d1a7e1b9f4b9f">
IMP::spb::KinkPairScore::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1MonteCarloWithWte.html#a789f09758c4d8af1aff692b7dbb86262">
IMP::spb::MonteCarloWithWte::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1NuisanceRangeModifier.html#ab4bb6ea7414eadbf22b65c537f06c3ae">
IMP::spb::NuisanceRangeModifier::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1PbcBoxedMover.html#ab7ec2d8cf6fa79a62b566aee17359933">
IMP::spb::PbcBoxedMover::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1PbcBoxedRigidBodyMover.html#abee06b785b78ac79c71d8cccafd01e21">
IMP::spb::PbcBoxedRigidBodyMover::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1RMSDMetric.html#a3b6bf23bebc2bf08a4e31f3c8aceff1c">
IMP::spb::RMSDMetric::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1RigidBodyNewMover.html#ab5923b371293f8ce3fdc0eecd1967995">
IMP::spb::RigidBodyNewMover::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1SameParticlePairFilter.html#ad21526a7b70c986c68b516cb6fd90529">
IMP::spb::SameParticlePairFilter::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1SameRigidBodyPairFilter.html#ad1ed3e3a802a5e6ac253bf2554c80bc0">
IMP::spb::SameRigidBodyPairFilter::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1TiltSingletonScore.html#a6a1a766a7cee93905c22a2adf8f95868">
IMP::spb::TiltSingletonScore::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1TransformationSymmetry.html#aa37875caa815b71baaf2fcf79de5bfe2">
IMP::spb::TransformationSymmetry::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1TwoStateGoModelRestraint.html#a88c2cbe12b3f023dfa8dfc470fae035e">
IMP::spb::TwoStateGoModelRestraint::get_version_info()</a>, <a href=
"classIMP_1_1spb_1_1UniformBoundedRestraint.html#a8a0fe29fcd0099be02a847d76d9c2630">
IMP::spb::UniformBoundedRestraint::get_version_info()</a>, <a href=
"classIMP_1_1statistics_1_1ChiSquareMetric.html#a22c418145ee5bd1e4334ae12048ea2aa">
IMP::statistics::ChiSquareMetric::get_version_info()</a>, <a href=
"classIMP_1_1statistics_1_1ConfigurationSetRMSDMetric.html#a358999e6c1ba7d497880e4abb638215b">
IMP::statistics::ConfigurationSetRMSDMetric::get_version_info()</a>, <a href=
"classIMP_1_1statistics_1_1ConfigurationSetXYZEmbedding.html#a865f5470d30e0d05efdf271ed407c6b7">
IMP::statistics::ConfigurationSetXYZEmbedding::get_version_info()</a>, <a href=
"classIMP_1_1statistics_1_1EuclideanMetric.html#aaeb2c8d309e7cf9a8e01464e62d0ca96">
IMP::statistics::EuclideanMetric::get_version_info()</a>, <a href=
"classIMP_1_1statistics_1_1ParticleEmbedding.html#aeff15dcaa166b60ba0a3f436ac0f47b1">
IMP::statistics::ParticleEmbedding::get_version_info()</a>, <a href=
"classIMP_1_1statistics_1_1PartitionalClusteringWithCenter.html#ab70278f365fdb0f6e160a865ea540240">
IMP::statistics::PartitionalClusteringWithCenter::get_version_info()</a>, <a href=
"classIMP_1_1statistics_1_1RecursivePartitionalClusteringEmbedding.html#a0156bcf19ab90355ecade5eb809bdc66">
IMP::statistics::RecursivePartitionalClusteringEmbedding::get_version_info()</a>, <a href=
"classIMP_1_1statistics_1_1RecursivePartitionalClusteringMetric.html#a6b721d47e2308e72a73c68551782a8ca">
IMP::statistics::RecursivePartitionalClusteringMetric::get_version_info()</a>, <a href=
"classIMP_1_1statistics_1_1VectorDEmbedding.html#a2a6478c45f40d1e8f0046a4acfadc8d1">
IMP::statistics::VectorDEmbedding::get_version_info()</a>, <a href=
"classIMP_1_1symmetry_1_1BallMover.html#a0af5c553d14cd1157698ca8a6cbb0d6d">
IMP::symmetry::BallMover::get_version_info()</a>, <a href=
"classIMP_1_1symmetry_1_1RigidBodyMover.html#ac1a15e3dbecf0aa5c7d3a8dceb2dc9e8">
IMP::symmetry::RigidBodyMover::get_version_info()</a></td></tr>
45 # IMP.algebra # {#factory_index_algebra}
47 <th>Class</th><th>Factories</th></tr>
48 <tr><td>@ref
IMP::algebra::BoundingBoxD</td><td><a href=
"classIMP_1_1algebra_1_1BoundingBoxD.html#aa8092895377c9aca82b78050456b33c9">
IMP::algebra::BoundingBoxD::operator+=()</a>, <a href=
"classIMP_1_1algebra_1_1BoundingBoxD.html#abe7e39f1ee5d58dae32272ee29e51f0b">
IMP::algebra::BoundingBoxD::operator+=()</a>, <a href=
"classIMP_1_1algebra_1_1BoundingBoxD.html#a83c31adcb8aafca645af67822d996eed">
IMP::algebra::BoundingBoxD::operator+=()</a>, <a href=
"classIMP_1_1algebra_1_1Cone3D.html#a42215f5c82c6b41689887aee272d6f29">
IMP::algebra::Cone3D::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1Cylinder3D.html#a2c0e1a36a0080caf666ff5e8657c44ea">
IMP::algebra::Cylinder3D::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1DefaultEmbeddingD.html#aa939cc38c61633c05ba8f512671c9922">IMP::algebra::DefaultEmbeddingD::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1DefaultEmbeddingD.html#a2ef44b764283d6da46c20bfbf17dbff7">IMP::algebra::DefaultEmbeddingD::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1Ellipsoid3D.html#a51e51989d370ac6d1f72605ea2b55659">
IMP::algebra::Ellipsoid3D::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1GridD.html#a008aec5907f2445fdb9ab7f0ad9857b4">IMP::algebra::GridD::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1Line3D.html#a0ddee92213d742382802d0fe52ca8e44">
IMP::algebra::Line3D::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1LogEmbeddingD.html#afcefc82a3dc1a028efd0ef7a76ae3f62">IMP::algebra::LogEmbeddingD::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1LogEmbeddingD.html#a19437cca74047a689ad5622534007858">IMP::algebra::LogEmbeddingD::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1Plane3D.html#aedce7034965a145fc52252f640761b26">
IMP::algebra::Plane3D::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1Segment3D.html#abd21d39499ca4acd3616d7a9355b90fd">
IMP::algebra::Segment3D::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1SpherePatch3D.html#ae5375e21b4c4a14ecf4278d36cab2387">
IMP::algebra::SpherePatch3D::get_bounding_box()</a>, <a href=
"classIMP_1_1algebra_1_1Torus3D.html#aaaa8ffb3b19028f35539da46be602814">
IMP::algebra::Torus3D::get_bounding_box()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#a0b2a97a5d1d9906dd31d60a8ba588e5a">
IMP::atom::Hierarchy::get_bounding_box()</a>, <a href=
"classIMP_1_1display_1_1BoundingBoxGeometry.html#ac2655fba9566ec3dc3e1063f8f29077d">IMP::display::BoundingBoxGeometry::get_geometry()</a>, <a href=
"classIMP_1_1em_1_1SampledDensityMap.html#a0aeeeba26e971ba0467c70a3ccdc21dc">
IMP::em::SampledDensityMap::calculate_particles_bounding_box()</a>, <a href=
"classIMP_1_1statistics_1_1HistogramD.html#a1076a15bf53877cf192b36b1f7aa7b9f">IMP::statistics::HistogramD::get_bounding_box()</a>, <a href=
"namespaceIMP_1_1algebra.html#aecec6f9c6ca668315e6693773ac1c15f">
IMP::algebra::get_cube_kd()</a>, <a href=
"namespaceIMP_1_1algebra.html#aec3bea2d24fbbf621216822517ca1593">IMP::algebra::get_transformed()</a>, <a href=
"namespaceIMP_1_1algebra.html#aa88ff22c3c9a9a857314e714d69dea62">
IMP::algebra::get_unit_bounding_box_kd()</a>, <a href=
"namespaceIMP_1_1core.html#a0ba3b6f5fba01f4ecf8a3b8f18a311f2">
IMP::core::get_bounding_box()</a>, <a href=
"namespaceIMP_1_1em.html#a820db29914536321043260f19e89fca1">
IMP::em::get_bounding_box()</a>, <a href=
"namespaceIMP_1_1em.html#a58f523ec7b9df988f0c9ef3caae1b6a0">
IMP::em::get_bounding_box()</a></td></tr>
50 <tr><td>@ref
IMP::algebra::Cylinder3D</td><td><a href=
"classIMP_1_1algebra_1_1Cylinder3D.html#a1f598fc535a050c3979cd2726732a552">
IMP::algebra::Cylinder3D::get_cylinder_3d_geometry()</a>, <a href=
"classIMP_1_1core_1_1SurfaceGeometry.html#a46c142841b86dff45e9afac8d1cb7b80">IMP::core::SurfaceGeometry::get_cylinder()</a>, <a href=
"classIMP_1_1display_1_1CylinderGeometry.html#a68933bd92183b7af45927c57be378355">IMP::display::CylinderGeometry::get_geometry()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#ab0054d84562fce73f752add4c727654f">IMP::npctransport::SimulationData::get_cylinder()</a></td></tr>
51 <tr><td>@ref
IMP::algebra::DenseGridStorageD</td><td><a href=
"classIMP_1_1algebra_1_1DenseGridStorageD.html#a5cd0208038b5008c73248047c91f38a7">IMP::algebra::DenseGridStorageD::operator=()</a>, <a href=
"namespaceIMP_1_1em.html#a9c72b01f6d6bbe0c84a0779fc08b809c">
IMP::em::get_grid()</a></td></tr>
53 <tr><td>@ref
IMP::algebra::ExtendedGridIndexD</td><td><a href=
"classIMP_1_1algebra_1_1BoundedGridRangeD.html#a737ab039ddae4cf86fe92044c15424e6">IMP::algebra::BoundedGridRangeD::get_extended_indexes()</a>, <a href=
"classIMP_1_1algebra_1_1BoundedGridRangeD.html#a61d03caf63e70aa0c0e6d6d74130c27c">
IMP::algebra::BoundedGridRangeD::get_end_index()</a>, <a href=
"classIMP_1_1algebra_1_1BoundedGridRangeD.html#a395874afecb718cda8209087070b9aaa">
IMP::algebra::BoundedGridRangeD::get_maximum_extended_index()</a>, <a href=
"classIMP_1_1algebra_1_1BoundedGridRangeD.html#a3630e2bb1873a86f4606a04b5bf7c847">
IMP::algebra::BoundedGridRangeD::get_minimum_extended_index()</a>, <a href=
"classIMP_1_1algebra_1_1DefaultEmbeddingD.html#a7c5f5633d6495ade19fa00cca4dccff5">
IMP::algebra::DefaultEmbeddingD::get_extended_index()</a>, <a href=
"classIMP_1_1algebra_1_1ExtendedGridIndexD.html#a950308f6221c222ca73d04480a595f4b">IMP::algebra::ExtendedGridIndexD::get_offset()</a>, <a href=
"classIMP_1_1algebra_1_1ExtendedGridIndexD.html#a68dba8692dbf509e79f7c884a030996e">IMP::algebra::ExtendedGridIndexD::get_uniform_offset()</a>, <a href=
"classIMP_1_1algebra_1_1GridD.html#a0e464be5a75232f1392a54c3bd9711eb">IMP::algebra::GridD::get_nearest_extended_index()</a>, <a href=
"classIMP_1_1algebra_1_1GridD.html#a1f513a99898cd34a8f760b887b4f9220">
IMP::algebra::GridD::get_extended_index()</a>, <a href=
"classIMP_1_1algebra_1_1LogEmbeddingD.html#a333cca1384be415a4beb6423dc4e6273">
IMP::algebra::LogEmbeddingD::get_extended_index()</a>, <a href=
"classIMP_1_1algebra_1_1UnboundedGridRangeD.html#ae36705377d9f2caf5c06984d1ce8bfaa">IMP::algebra::UnboundedGridRangeD::get_extended_indexes()</a></td></tr>
57 <tr><td>@ref
IMP::algebra::GridIndexD</td><td><a href=
"classIMP_1_1algebra_1_1BoundedGridRangeD.html#a7a7bb6e98f48c2153626ad288340363f">IMP::algebra::BoundedGridRangeD::get_all_indexes()</a>, <a href=
"classIMP_1_1algebra_1_1BoundedGridRangeD.html#abfd54359550894c029defa77ead61ab8">IMP::algebra::BoundedGridRangeD::get_indexes()</a>, <a href=
"classIMP_1_1algebra_1_1BoundedGridRangeD.html#acf1f33b1c1d7957330f442f15d656ac9">
IMP::algebra::BoundedGridRangeD::get_index()</a>, <a href=
"classIMP_1_1algebra_1_1DefaultEmbeddingD.html#ae4437a1c4ca95b4abbf58c9531209d02">IMP::algebra::DefaultEmbeddingD::get_index()</a>, <a href=
"classIMP_1_1algebra_1_1GridD.html#a81b743c5cc601b32b1eb1b31874afeb6">IMP::algebra::GridD::get_nearest_index()</a>, <a href=
"classIMP_1_1algebra_1_1GridD.html#a24ba706b342d7dc7e3c5cb42ed64fccf">IMP::algebra::GridD::add_voxel()</a>, <a href=
"classIMP_1_1algebra_1_1LogEmbeddingD.html#a09613ab4444befc995178b6b8a416358">IMP::algebra::LogEmbeddingD::get_index()</a>, <a href=
"classIMP_1_1algebra_1_1SparseGridStorageD.html#a9943a6836e190dd7f3f1bff9c550ed8b">IMP::algebra::SparseGridStorageD::get_indexes()</a>, <a href=
"classIMP_1_1algebra_1_1SparseGridStorageD.html#ab3283a6eb40d179b0648b804a95ef499">
IMP::algebra::SparseGridStorageD::add_voxel()</a>, <a href=
"classIMP_1_1algebra_1_1SparseGridStorageD.html#abcf4643d745ad8f61ac711026cb9a5cb">
IMP::algebra::SparseGridStorageD::get_index()</a></td></tr>
60 <tr><td>@ref
IMP::algebra::ReferenceFrame3D</td><td><a href=
"classIMP_1_1algebra_1_1Ellipsoid3D.html#a64cdd46002ef8528e8583d5de98b749a">IMP::algebra::Ellipsoid3D::get_reference_frame()</a>, <a href=
"classIMP_1_1algebra_1_1Gaussian3D.html#a455df294c6db94bd0407f2b7fe56577a">IMP::algebra::Gaussian3D::get_reference_frame()</a>, <a href=
"classIMP_1_1algebra_1_1ReferenceFrame3D.html#af4e8c0e2c90dffb8a059a866ada3f7e4">
IMP::algebra::ReferenceFrame3D::get_global_reference_frame()</a>, <a href=
"classIMP_1_1algebra_1_1ReferenceFrame3D.html#ac4adf03ce952d182320a9a99709cb728">
IMP::algebra::ReferenceFrame3D::get_local_reference_frame()</a>, <a href=
"classIMP_1_1core_1_1RigidBody.html#ac13846a110676d06ea4baaa5530f4a49">
IMP::core::RigidBody::get_reference_frame()</a>, <a href=
"classIMP_1_1core_1_1Surface.html#ac41c7cc9e54d559a3f6235b91b91a2d6">
IMP::core::Surface::get_reference_frame()</a>, <a href=
"classIMP_1_1display_1_1ReferenceFrameGeometry.html#a78238ec0ea014903e5da1a323ace6fd2">IMP::display::ReferenceFrameGeometry::get_geometry()</a>, <a href=
"classIMP_1_1domino_1_1RigidBodyStates.html#accb521c129d1f71f3e5388e4a7d6aaa7">IMP::domino::RigidBodyStates::get_reference_frame()</a>, <a href=
"classIMP_1_1kinematics_1_1KinematicForest.html#ae9aea73c759c2ceeb7c88c46553fdc47">IMP::kinematics::KinematicForest::get_reference_frame_safe()</a>, <a href=
"namespaceIMP_1_1algebra.html#ad1ae16d9089296d2d7f458c2d667e587">IMP::algebra::get_transformed()</a>, <a href=
"namespaceIMP_1_1core.html#a345d1856d74f6a0768a145c96920e04d">
IMP::core::get_initial_reference_frame()</a>, <a href=
"namespaceIMP_1_1core.html#ae8f9b0b21c300bd80d9c3507fa5a24c0">
IMP::core::get_initial_reference_frame()</a></td></tr>
62 <tr><td>@ref
IMP::algebra::Rotation3D</td><td><a href=
"classIMP_1_1algebra_1_1Rotation3D.html#a64277befc08357d6768b5f8cba5fdf56">
IMP::algebra::Rotation3D::get_inverse()</a>, <a href=
"classIMP_1_1algebra_1_1Rotation3D.html#add6b45584377d72708fa41d93cf0e912">
IMP::algebra::Rotation3D::operator*()</a>, <a href=
"classIMP_1_1algebra_1_1Rotation3D.html#a1f4eed6fc383b00ae8c5430c42190d39">
IMP::algebra::Rotation3D::operator/()</a>, <a href=
"classIMP_1_1algebra_1_1Rotation3D.html#a754ca1baec7553d4487fa6bd532bf372">IMP::algebra::Rotation3D::operator/=()</a>, <a href=
"classIMP_1_1algebra_1_1Rotation3D.html#a2c5853c7c473d87926900b9a6136749e">IMP::algebra::Rotation3D::operator=()</a>, <a href=
"classIMP_1_1algebra_1_1Transformation3D.html#af38f7b53af59c4d73defebca22893b14">
IMP::algebra::Transformation3D::get_rotation()</a>, <a href=
"classIMP_1_1atom_1_1BrownianDynamicsTAMD.html#af52b68ac46666de8213dda7600c58494">IMP::atom::BrownianDynamicsTAMD::compute_rotation_0()</a>, <a href=
"classIMP_1_1core_1_1RigidBody.html#ac1209d4693e1c8e612865d923e269e6e">
IMP::core::RigidBody::get_rotation()</a>, <a href=
"classIMP_1_1em2d_1_1GridStates.html#ac3e4528519d25658257b5f01a6bf10ce">
IMP::em2d::GridStates::get_orientation()</a>, <a href=
"classIMP_1_1em2d_1_1ProjectionParameters.html#ae1773e9f6d26fced9d3511e6d8ffdca2">IMP::em2d::ProjectionParameters::get_rotation()</a>, <a href=
"classIMP_1_1em2d_1_1RegistrationResult.html#acd2c31e953d155a20d200440af0331e6">
IMP::em2d::RegistrationResult::get_rotation()</a>, <a href=
"classIMP_1_1em_1_1PCAAligner.html#a717801d249ab2dd4b3b33eb5849be168">IMP::em::PCAAligner::get_rotation_matrix()</a>, <a href=
"namespaceIMP_1_1algebra.html#a50728b3c7c4674d610b353a58510b601">
IMP::algebra::get_rotation_from_fixed_xyz()</a>, <a href=
"namespaceIMP_1_1algebra.html#a25e458f2015410be98a7805c50178c75">
IMP::algebra::get_rotation_from_fixed_zxz()</a>, <a href=
"namespaceIMP_1_1algebra.html#a0d07cdae4fbf65960b6d02ecdc4501f6">
IMP::algebra::get_rotation_from_fixed_zyz()</a>, <a href=
"namespaceIMP_1_1algebra.html#a216ec1243a72a2c3f9ddf6bd8bc22ece">
IMP::algebra::compose()</a>, <a href=
"namespaceIMP_1_1algebra.html#a98a32dfffbb6b9f5f20a12dd479f1b9b">
IMP::algebra::get_identity_rotation_3d()</a>, <a href=
"namespaceIMP_1_1algebra.html#aad56f25091896ce8e87f8e5f1098bf79">
IMP::algebra::get_interpolated()</a>, <a href=
"namespaceIMP_1_1algebra.html#a139712da5a82968a06bb71b09196bc5b">
IMP::algebra::get_random_rotation_3d()</a>, <a href=
"namespaceIMP_1_1algebra.html#abd23e8a25dda2d4acf8c00db35e2537f">
IMP::algebra::get_random_rotation_3d()</a>, <a href=
"namespaceIMP_1_1algebra.html#a283f1463563e2c38fd3f4ae788c11484">
IMP::algebra::get_rotation_about_axis()</a>, <a href=
"namespaceIMP_1_1algebra.html#ad96b1551c23f1f62de05e9ebbcbf3429">
IMP::algebra::get_rotation_about_normalized_axis()</a>, <a href=
"namespaceIMP_1_1algebra.html#a28b2093fb8db4340e11cce11de658572">
IMP::algebra::get_rotation_from_matrix()</a>, <a href=
"namespaceIMP_1_1algebra.html#a00a10a59dcf29a8947623a3fc69edb61">
IMP::algebra::get_rotation_from_matrix()</a>, <a href=
"namespaceIMP_1_1algebra.html#a3003fd1a5254db165a8600f2979e7146">
IMP::algebra::get_rotation_from_vector4d()</a>, <a href=
"namespaceIMP_1_1algebra.html#a010dd03d5d6e849ea7b0991f646d6b53">
IMP::algebra::get_rotation_from_x_y_axes()</a>, <a href=
"namespaceIMP_1_1algebra.html#a6af4099df3f5babb4891be41ed215978">
IMP::algebra::get_rotation_taking_first_to_second()</a>, <a href=
"namespaceIMP_1_1bayesianem.html#aabe932ba1e24530c42cd830ca3fe7368">IMP::bayesianem::get_rotation_matrix()</a></td></tr>
63 <tr><td>@ref
IMP::algebra::Segment3D</td><td><a href=
"classIMP_1_1algebra_1_1Cylinder3D.html#a4b84e7480a5b89054d7f4a7e401b86be">IMP::algebra::Cylinder3D::get_segment()</a>, <a href=
"classIMP_1_1algebra_1_1Line3D.html#ab153c557e037c6cde16a6feb795e1094">
IMP::algebra::Line3D::get_segment_starting_at()</a>, <a href=
"classIMP_1_1algebra_1_1Segment3D.html#af5c43b376efc839be7570ffa3ee7825b">
IMP::algebra::Segment3D::get_segment_3d_geometry()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyTorque.html#a799b8bbd20a5f67426fc210e634d1e2d">IMP::core::RigidBodyTorque::extract_geometry()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyTorque.html#abe94f37a6c3008811e61f39ec445a553">IMP::core::RigidBodyTorque::get_geometry()</a>, <a href=
"classIMP_1_1core_1_1SurfaceGeometry.html#aaa78fdc2c5da8633308fb2bfbbdb27fa">IMP::core::SurfaceGeometry::get_segment()</a>, <a href=
"classIMP_1_1display_1_1SegmentGeometry.html#a6a445735008db1fa269f7846dcd40943">IMP::display::SegmentGeometry::get_geometry()</a>, <a href=
"namespaceIMP_1_1algebra.html#a242c09659e380bd7d7c1dbc779863023">
IMP::algebra::get_shortest_segment()</a>, <a href=
"namespaceIMP_1_1algebra.html#afacab5ba739f7028d32cd34be05a10c7">
IMP::algebra::get_shortest_segment()</a>, <a href=
"namespaceIMP_1_1algebra.html#ae4a0378baab9f9cb01c824f2ec6abc51">
IMP::algebra::get_projected()</a>, <a href=
"namespaceIMP_1_1algebra.html#aba7bf2d5c4d78a8bcd21d63ced9c30ad">
IMP::algebra::get_segment_connecting_first_to_second()</a></td></tr>
64 <tr><td>@ref
IMP::algebra::SphereD</td><td><a href=
"namespaceIMP_1_1algebra.html#a4834da35487ef0d191fbc1a9371724eb">IMP::algebra::get_unit_sphere_kd()</a></td></tr>
68 <tr><td>@ref
IMP::algebra::Transformation3D</td><td><a href=
"classIMP_1_1algebra_1_1ReferenceFrame3D.html#a9a62f89fecbe2d134d417038a0272b47">IMP::algebra::ReferenceFrame3D::get_inverse()</a>, <a href=
"classIMP_1_1algebra_1_1ReferenceFrame3D.html#a0ea138451954b123f39698f67903f5ce">
IMP::algebra::ReferenceFrame3D::get_transformation_from()</a>, <a href=
"classIMP_1_1algebra_1_1ReferenceFrame3D.html#a1e26b1d2ad062f25d54acdceb4566976">
IMP::algebra::ReferenceFrame3D::get_transformation_to()</a>, <a href=
"classIMP_1_1algebra_1_1Transformation3D.html#a11749e8dd0e6454fa96ffb626b39949b">IMP::algebra::Transformation3D::get_inverse()</a>, <a href=
"classIMP_1_1algebra_1_1Transformation3D.html#a3d4eb9fcd2303c38d71935e133c909ea">
IMP::algebra::Transformation3D::operator*()</a>, <a href=
"classIMP_1_1algebra_1_1Transformation3D.html#a07bc275d62927745a4eb2df457bbaf12">IMP::algebra::Transformation3D::operator*=()</a>, <a href=
"classIMP_1_1algebra_1_1Transformation3D.html#ad527f26807df0a9fe8a5aca648d91b4c">
IMP::algebra::Transformation3D::operator/()</a>, <a href=
"classIMP_1_1algebra_1_1Transformation3D.html#afe442ff46864a4e9fde422dc62d30047">IMP::algebra::Transformation3D::operator/=()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyMember.html#a1b2de56684ac4d70d7bf185f037e5a45">
IMP::core::RigidBodyMember::get_internal_transformation()</a>, <a href=
"classIMP_1_1core_1_1SurfaceSymmetryConstraint.html#af08750bac7efbb396bfc2c145ec92c77">IMP::core::SurfaceSymmetryConstraint::get_transformation()</a>, <a href=
"classIMP_1_1core_1_1TransformationSymmetry.html#ac7d02396d4e224e33d0886c2e74c9aaf">IMP::core::TransformationSymmetry::get_internal_transformation()</a>, <a href=
"classIMP_1_1core_1_1TransformationSymmetry.html#acff2b23995b0f4b50c6e4bd4574f54d0">IMP::core::TransformationSymmetry::get_transformation()</a>, <a href=
"classIMP_1_1core_1_1TransformationSymmetryMover.html#a88aadb8c8524ef400fc313a1be0441fa">IMP::core::TransformationSymmetryMover::get_random_rotation_about_point()</a>, <a href=
"classIMP_1_1domino_1_1NestedRigidBodyStates.html#a12dda30d492ea96fa4ef79242abc9f8c">IMP::domino::NestedRigidBodyStates::get_transformation()</a>, <a href=
"classIMP_1_1em2d_1_1PCAFitRestraint.html#a3e2c1070df0792b34ee59339a1e83ba3">
IMP::em2d::PCAFitRestraint::get_transformation()</a>, <a href=
"classIMP_1_1em_1_1EnvelopeFitRestraint.html#a0de188aa0a38a78ec85e898b09b763f8">IMP::em::EnvelopeFitRestraint::get_transformation()</a>, <a href=
"classIMP_1_1em_1_1FittingSolutions.html#a46b28b36a52016e65285fba309ae3d5b">
IMP::em::FittingSolutions::get_transformation()</a>, <a href=
"classIMP_1_1kinematics_1_1Joint.html#a3e4b1f2fa4792d300278ebda6c091b5d">
IMP::kinematics::Joint::get_transformation_child_to_parent()</a>, <a href=
"classIMP_1_1kinematics_1_1Joint.html#ac31f8b3fff9145b88f5f9bb4d7b4b021">
IMP::kinematics::Joint::get_transformation_child_to_parent_no_checks()</a>, <a href=
"classIMP_1_1kinematics_1_1RevoluteJoint.html#a7b6f7b757bf908b57e23c481bbfd06bf">
IMP::kinematics::RevoluteJoint::get_rotation_about_joint_in_parent_coordinates()</a>, <a href=
"classIMP_1_1multifit_1_1FittingSolutionRecord.html#a42ee92b9006f1854437cbd96d8a03223">IMP::multifit::FittingSolutionRecord::get_dock_transformation()</a>, <a href=
"classIMP_1_1multifit_1_1FittingSolutionRecord.html#ae71f26cdfc8fdb94a616687222cb3a69">IMP::multifit::FittingSolutionRecord::get_fit_transformation()</a>, <a href=
"classIMP_1_1pmi1_1_1TransformMover.html#a7483092a2062e0c41f9a4a645762a05b">IMP::pmi1::TransformMover::get_last_transformation()</a>, <a href=
"classIMP_1_1pmi_1_1TransformMover.html#ab67712fe16e54febec5c8411013a7138">IMP::pmi::TransformMover::get_last_transformation()</a>, <a href=
"classIMP_1_1spb_1_1DistanceRMSDMetric.html#a0a0bf383cc7420e3f6d389ff6dbb251f">IMP::spb::DistanceRMSDMetric::get_transformation()</a>, <a href=
"classIMP_1_1spb_1_1PbcBoxedMover.html#a809ab75d13edfc108f6b6beb6db3be37">IMP::spb::PbcBoxedMover::get_transformation()</a>, <a href=
"classIMP_1_1spb_1_1PbcBoxedRigidBodyMover.html#a0fdb29cf211306df2a0812f2141cc091">IMP::spb::PbcBoxedRigidBodyMover::get_transformation()</a>, <a href=
"classIMP_1_1spb_1_1TransformationSymmetry.html#ae23cbf48e7c15d087775ede2d0d5d03d">IMP::spb::TransformationSymmetry::get_transformation()</a>, <a href=
"namespaceIMP_1_1algebra.html#ac1d0008195a1cf08b39038c2d7dc44a8">
IMP::algebra::get_transformation_aligning_first_to_second()</a>, <a href=
"namespaceIMP_1_1algebra.html#af2121b116324f67ee007e4aef258555c">
IMP::algebra::compose()</a>, <a href=
"namespaceIMP_1_1algebra.html#a5c675979c1dfb0467246764a7e1e2cbf">
IMP::algebra::get_identity_transformation_3d()</a>, <a href=
"namespaceIMP_1_1algebra.html#a1b3cdecd88bb99e7cf34d42117199775">
IMP::algebra::get_random_local_transformation()</a>, <a href=
"namespaceIMP_1_1algebra.html#a07063149bf0d6fd24bd5a1116d6b5115">
IMP::algebra::get_rotation_about_point()</a>, <a href=
"namespaceIMP_1_1algebra.html#a95b9c2466fd2ba29cddff88efc887aff">
IMP::algebra::get_transformation_3d()</a>, <a href=
"namespaceIMP_1_1algebra.html#a2e7851e2cdd810e68bb3235699c0f5ba">IMP::algebra::get_transformation_from_first_to_second()</a>, <a href=
"namespaceIMP_1_1algebra.html#a40b9b1290fa21102bda8255d8eb3c4d8">
IMP::algebra::get_transformation_from_first_triangle_to_second()</a>, <a href=
"namespaceIMP_1_1atom.html#a72ceba6f0fb3a05221086170a55f4d46">
IMP::atom::get_transformation_aligning_first_to_second()</a>, <a href=
"namespaceIMP_1_1bayesianem.html#a2b1cbbee53f6277e776c525a0ea8ff09">
IMP::bayesianem::get_transformation_aligning_first_to_second()</a>, <a href=
"namespaceIMP_1_1cnmultifit.html#a2e56b936c9db947d7febcc93a1389a2f">IMP::cnmultifit::calc_transformation_around_axis()</a>, <a href=
"namespaceIMP_1_1core.html#a805c9dce8eeee77af7354cec81a3991a">
IMP::core::get_transformation_aligning_first_to_second()</a></td></tr>
69 <tr><td>@ref
IMP::algebra::Triangle3D</td><td><a href=
"classIMP_1_1display_1_1TriangleGeometry.html#a3fb7310b1377825c917fe57545de7c0a">IMP::display::TriangleGeometry::get_geometry()</a>, <a href=
"namespaceIMP_1_1algebra.html#a3619d60308d5ac5c78e601d1e6426dee">
IMP::algebra::get_largest_triangle()</a>, <a href=
"namespaceIMP_1_1algebra.html#a8de5b9c2c7304487d384942301cdfde3">IMP::algebra::get_triangle_3d()</a></td></tr>
70 <tr><td>@ref IMP::algebra::UnitSimplexD_3-1_01_4</td><td><a href=
"classIMP_1_1isd_1_1Weight.html#a920b97218d9fd9e9c29439feb4209e04">
IMP::isd::Weight::get_unit_simplex()</a></td></tr>
71 <tr><td>@ref
IMP::algebra::VectorD</td><td><a href=
"classIMP_1_1algebra_1_1BoundingBoxD.html#aa31f8295a3ecc17ce469438df678617b">
IMP::algebra::BoundingBoxD::get_corner()</a>, <a href=
"classIMP_1_1algebra_1_1DefaultEmbeddingD.html#a42f36edf378dc3cb21d8b8320b2262d9">IMP::algebra::DefaultEmbeddingD::get_center()</a>, <a href=
"classIMP_1_1algebra_1_1DefaultEmbeddingD.html#a584a87ad7db962f804e65beb46356e8a">IMP::algebra::DefaultEmbeddingD::get_center()</a>, <a href=
"classIMP_1_1algebra_1_1DefaultEmbeddingD.html#a339984d8e099583b0cadaad5e6bf47c8">IMP::algebra::DefaultEmbeddingD::get_origin()</a>, <a href=
"classIMP_1_1algebra_1_1DefaultEmbeddingD.html#a243f6b777d32aa49cc8e585edfaf79f6">
IMP::algebra::DefaultEmbeddingD::get_unit_cell()</a>, <a href=
"classIMP_1_1algebra_1_1LogEmbeddingD.html#a6f4d8f177ef76a4b4f05dbc3e26489f1">IMP::algebra::LogEmbeddingD::get_center()</a>, <a href=
"classIMP_1_1algebra_1_1LogEmbeddingD.html#a5cb83dd94de983716f6591c717d1b47a">IMP::algebra::LogEmbeddingD::get_center()</a>, <a href=
"classIMP_1_1algebra_1_1LogEmbeddingD.html#a3a3ab44f98c54855268ef87cb10080b9">IMP::algebra::LogEmbeddingD::get_origin()</a>, <a href=
"classIMP_1_1algebra_1_1LogEmbeddingD.html#adb20715e237723bf9de57872e11fb515">
IMP::algebra::LogEmbeddingD::get_unit_cell()</a>, <a href=
"classIMP_1_1algebra_1_1PrincipalComponentAnalysisD.html#a514a16c972ceea192e39bb308896e28d">IMP::algebra::PrincipalComponentAnalysisD::get_centroid()</a>, <a href=
"classIMP_1_1algebra_1_1PrincipalComponentAnalysisD.html#a87432e5b75325d5988dddc9c69d0a0e9">IMP::algebra::PrincipalComponentAnalysisD::get_principal_component()</a>, <a href=
"classIMP_1_1algebra_1_1PrincipalComponentAnalysisD.html#a0ba09fe87df97ebef41f58c73ffaa710">IMP::algebra::PrincipalComponentAnalysisD::get_principal_components()</a>, <a href=
"classIMP_1_1algebra_1_1PrincipalComponentAnalysisD.html#a8bc34c872d7d80a7693bea12b91dc530">IMP::algebra::PrincipalComponentAnalysisD::get_principal_values()</a>, <a href=
"classIMP_1_1algebra_1_1SphereD.html#a66db928fc3b3bdcf01e891ba3507a3a0">IMP::algebra::SphereD::get_center()</a>, <a href=
"classIMP_1_1algebra_1_1UnitSimplexBaseD.html#a60cc3282f9f54822abad19cd7fc970ce">
IMP::algebra::UnitSimplexBaseD::get_barycenter()</a>, <a href=
"classIMP_1_1algebra_1_1VectorD.html#ae812e3f853fb6b2aa3c28be0cac1068a">IMP::algebra::VectorD::get_unit_vector()</a>, <a href=
"classIMP_1_1algebra_1_1VectorD.html#a78101a1171a91a39f8fa48c21fc88b02">IMP::algebra::VectorD::operator*()</a>, <a href=
"classIMP_1_1algebra_1_1VectorD.html#a04bc1569ddb15624437312ac6dcea370">IMP::algebra::VectorD::operator*=()</a>, <a href=
"classIMP_1_1algebra_1_1VectorD.html#a441606f948618b1faa1372da374647b2">IMP::algebra::VectorD::operator+()</a>, <a href=
"classIMP_1_1algebra_1_1VectorD.html#abf2def3932df79b1c577d4eaba27b5da">IMP::algebra::VectorD::operator+=()</a>, <a href=
"classIMP_1_1algebra_1_1VectorD.html#a465db28829855dc1e2b4130ccf4970ad">IMP::algebra::VectorD::operator-()</a>, <a href=
"classIMP_1_1algebra_1_1VectorD.html#a35f40a1bd09bdb4cf1c48c7b189be911">IMP::algebra::VectorD::operator-()</a>, <a href=
"classIMP_1_1algebra_1_1VectorD.html#ad2e8dd83e90954e1b9bfa24d2ecff466">IMP::algebra::VectorD::operator-=()</a>, <a href=
"classIMP_1_1algebra_1_1VectorD.html#a70fee54ca37221cefb8dd755d51dbd21">IMP::algebra::VectorD::operator/()</a>, <a href=
"classIMP_1_1algebra_1_1VectorD.html#a3e0204ea98d9a5067400d54e3e48029a">IMP::algebra::VectorD::operator/=()</a>, <a href=
"classIMP_1_1core_1_1RigidBody.html#aa571733d4c574e3874777daef1f10d86">
IMP::core::RigidBody::get_rotational_derivatives()</a>, <a href=
"classIMP_1_1example_1_1ExampleTemplateClassD.html#a86ede654e64072869b8c25f23bfde3d6">
IMP::example::ExampleTemplateClassD::get_point()</a>, <a href=
"classIMP_1_1multifit_1_1GeometricHash.html#a27b2114018cc42b24e194589452e6e23">IMP::multifit::GeometricHash::from_bucket()</a>, <a href=
"classIMP_1_1statistics_1_1HistogramD.html#a3f95e629bfea515462d2554860205422">IMP::statistics::HistogramD::get_mean()</a>, <a href=
"classIMP_1_1statistics_1_1HistogramD.html#aa8f8a40723844f8f480074771dc3f0d2">IMP::statistics::HistogramD::get_standard_deviation()</a>, <a href=
"namespaceIMP_1_1algebra.html#a13112e2dae882f9c03a368a64986c198">
IMP::algebra::get_random_vector_in()</a>, <a href=
"namespaceIMP_1_1algebra.html#a15788395c438b5a87b99281375c9e1e7">
IMP::algebra::get_random_vector_on_unit_sphere()</a>, <a href=
"namespaceIMP_1_1algebra.html#a92b4877cc788e114ebc983c050f6218e">
IMP::algebra::get_basis_vector_kd()</a>, <a href=
"namespaceIMP_1_1algebra.html#ab2737562aba5b6a92a38c231538ce2cc">
IMP::algebra::get_ones_vector_kd()</a>, <a href=
"namespaceIMP_1_1algebra.html#aee99e2fdbca505bd36a478c9eb6ca171">
IMP::algebra::get_zero_vector_kd()</a></td></tr>
73 # IMP.atom # {#factory_index_atom}
75 <th>Class</th><th>Factories</th></tr>
78 <tr><td>@ref
IMP::atom::AtomType</td><td><a href=
"classIMP_1_1atom_1_1Atom.html#a867718443d203a8fdf69d0518b30fb1b">IMP::atom::Atom::get_atom_type()</a>, <a href=
"namespaceIMP_1_1atom.html#af4a6c11848aec861d0ef55068cf6261a">IMP::atom::get_atom_type()</a>, <a href=
"namespaceIMP_1_1atom.html#a02a38fbf0485b7d9642be56a9ee6bdc1">
IMP::atom::add_atom_type()</a></td></tr>
79 <tr><td>@ref
IMP::atom::Bond</td><td><a href=
"classIMP_1_1atom_1_1BondGraph.html#a323caace710dae515e4db435c6f65e3e">IMP::atom::BondGraph::get_bond()</a>, <a href=
"classIMP_1_1atom_1_1Bonded.html#ac6814fc8a4b9c0f53afe43fe02b1ea0b">
IMP::atom::Bonded::get_bond()</a>, <a href=
"group__bond.html#gad928d4afc3de5646070a1a55499772d3">
IMP::atom::create_bond()</a>, <a href=
"group__bond.html#ga1c817f9827d6115fe10530ca349098fa">
IMP::atom::create_bond()</a>, <a href=
"group__bond.html#ga4434a119a32491177223b0fe0d6f7d6d">
IMP::atom::create_custom_bond()</a>, <a href=
"group__bond.html#gaf75358e1a709b3b9cf2153bf741b5efa">
IMP::atom::get_bond()</a>, <a href=
"namespaceIMP_1_1kinematics.html#a1917c6e073639123db3b09d24d8b6dc6">IMP::kinematics::create_bond()</a></td></tr>
83 <tr><td>@ref
IMP::atom::CHARMMAtomTopology</td><td><a href=
"classIMP_1_1atom_1_1CHARMMResidueTopologyBase.html#afadfc33ed67175c434cad952d0d11307">IMP::atom::CHARMMResidueTopologyBase::get_atom()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMResidueTopologyBase.html#a91fff9329d2a36aa42719d443fb5fc35">IMP::atom::CHARMMResidueTopologyBase::get_atom()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMResidueTopologyBase.html#a42f75fbdc90c3d0ffc6da888c8a05d26">IMP::atom::CHARMMResidueTopologyBase::get_atom()</a></td></tr>
84 <tr><td>@ref
IMP::atom::CHARMMBondEndpoint</td><td><a href=
"classIMP_1_1atom_1_1CHARMMConnection.html#a5b2b5a53429c6cb8335145581de19850">IMP::atom::CHARMMConnection::get_endpoint()</a></td></tr>
85 <tr><td>@ref
IMP::atom::CHARMMConnection</td><td><a href=
"classIMP_1_1atom_1_1CHARMMResidueTopologyBase.html#add4b79ec748e743f8c1517428af553a6">IMP::atom::CHARMMResidueTopologyBase::get_angle()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMResidueTopologyBase.html#a55335589fdb6c359612a1fd37f8658e8">IMP::atom::CHARMMResidueTopologyBase::get_bond()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMResidueTopologyBase.html#ade44e2c67bf8499b944f2574db441373">IMP::atom::CHARMMResidueTopologyBase::get_dihedral()</a>, <a href=
"classIMP_1_1atom_1_1CHARMMResidueTopologyBase.html#aa4f8390a6d5efc7d3a94689490a32808">IMP::atom::CHARMMResidueTopologyBase::get_improper()</a></td></tr>
86 <tr><td>@ref
IMP::atom::CHARMMIdealResidueTopology</td><td><a href=
"classIMP_1_1atom_1_1CHARMMParameters.html#a93c5e6fbf6e839294e91ec2a179f74af">IMP::atom::CHARMMParameters::get_residue_topology()</a></td></tr>
87 <tr><td>@ref
IMP::atom::CHARMMInternalCoordinate</td><td><a href=
"classIMP_1_1atom_1_1CHARMMResidueTopologyBase.html#ad610c4fa66857daaad66e9ab60c548c1">IMP::atom::CHARMMResidueTopologyBase::get_internal_coordinate()</a></td></tr>
89 <tr><td>@ref
IMP::atom::CHARMMPatch</td><td><a href=
"classIMP_1_1atom_1_1CHARMMParameters.html#a7c83e58f1cea31a16484c15f8762635b">IMP::atom::CHARMMParameters::get_patch()</a></td></tr>
90 <tr><td>@ref
IMP::atom::CHARMMResidueTopology</td><td><a href=
"classIMP_1_1atom_1_1CHARMMSegmentTopology.html#a8e36b0b1c1bf882994cc5c7b0cfc782f">IMP::atom::CHARMMSegmentTopology::get_residue()</a></td></tr>
91 <tr><td>@ref
IMP::atom::CHARMMSegmentTopology</td><td><a href=
"classIMP_1_1atom_1_1CHARMMTopology.html#aae6f4e51cdf79001c102f679ebfc0a32">IMP::atom::CHARMMTopology::get_segment()</a></td></tr>
101 <tr><td>@ref
IMP::atom::ElementTable</td><td><a href=
"namespaceIMP_1_1atom.html#a5d562e4bead78d6882240505705d996e">IMP::atom::get_element_table()</a></td></tr>
103 <tr><td>@ref
IMP::atom::Hierarchy</td><td><a href=
"classIMP_1_1atom_1_1CHARMMTopology.html#a3d3e69d8d1d90294c5cedd6c0f33ca2c">
IMP::atom::CHARMMTopology::create_hierarchy()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#a4c26db6d0879ccf5d7fc72c30e9ec54e">
IMP::atom::Hierarchy::get_child()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#a3fa6740c3fcbf678ce64fb1db22a832e">
IMP::atom::Hierarchy::get_parent()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#a56ea228dde7abf072de82f4d9c82b629">
IMP::atom::Hierarchy::setup_particle()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#ad75a34753bf156665572134c16cec886">
IMP::atom::Hierarchy::create_clone()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#abbbefbfaf89bcb6b38a4ec0378c9766a">
IMP::atom::Hierarchy::create_clone_one()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#aea222a9dc8798d5ac1bcc492b73e72dd">
IMP::atom::Hierarchy::create_fragment()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#a86187ce8981c3d096033da90bbbdd0af">
IMP::atom::Hierarchy::get_residue()</a>, <a href=
"classIMP_1_1atom_1_1Hierarchy.html#aa1160975ada3565969069b9709de38b0">
IMP::atom::Hierarchy::get_root()</a>, <a href=
"classIMP_1_1atom_1_1Representation.html#af2cb8658482ff38369223b34bbb70d64">
IMP::atom::Representation::get_representation()</a>, <a href=
"classIMP_1_1npctransport_1_1FGChain.html#a2c9f4671ad24c6175cf9f8f3aa8b4029">IMP::npctransport::FGChain::get_root()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#afd8b183920e29cec1950ab9e322b223d">IMP::npctransport::SimulationData::get_root()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#aa2c1343216d8134ade6e414c511440f8">
IMP::npctransport::SimulationData::get_root_of_type()</a>, <a href=
"namespaceIMP_1_1atom.html#a1b4c863b0fefde1c1d95cdf6fed794a8">
IMP::atom::create_simplified_along_backbone()</a>, <a href=
"namespaceIMP_1_1atom.html#af12315103e56599289223816dc3b3aeb">
IMP::atom::create_simplified_along_backbone()</a>, <a href=
"namespaceIMP_1_1atom.html#a63d0f55dbe0f5805915a028a15bf1b1f">
IMP::atom::read_mol2()</a>, <a href=
"namespaceIMP_1_1atom.html#ae3392202746ce0960f27d6acb66c3523">
IMP::atom::read_pdb()</a>, <a href=
"namespaceIMP_1_1atom.html#aaa55b95e08377207f065cbab8bec4399">
IMP::atom::create_protein()</a>, <a href=
"namespaceIMP_1_1atom.html#a0d69cdcf058b017505e1b490054d48ff">
IMP::atom::create_protein()</a>, <a href=
"namespaceIMP_1_1atom.html#a1ec0bdeff49fc6221a7c4e370ba68279">
IMP::atom::create_simplified_assembly_from_volume()</a>, <a href=
"namespaceIMP_1_1atom.html#ad36632c4fe1304975ff1afce38816295">
IMP::atom::create_simplified_from_volume()</a>, <a href=
"namespaceIMP_1_1atom.html#a2cadcc607aa4c1f8b1ec4c0c8d493312">
IMP::atom::get_next_residue()</a>, <a href=
"namespaceIMP_1_1atom.html#ad329e5c66a8de2f49304492c5a690d90">
IMP::atom::get_previous_residue()</a>, <a href=
"namespaceIMP_1_1atom.html#a2efb72426efcdea0d7566faa78d793ae">
IMP::atom::read_mmcif()</a>, <a href=
"namespaceIMP_1_1atom.html#afa75d21223f20565d1cc585ec7ebc9af">
IMP::atom::read_pdb_or_mmcif()</a>, <a href=
"namespaceIMP_1_1multifit.html#a3ae2f2b63f2b07f548e4fd095871d9b8">
IMP::multifit::create_coarse_molecule_from_density()</a></td></tr>
106 <tr><td>@ref
IMP::atom::Molecule</td><td><a href=
"classIMP_1_1atom_1_1Molecule.html#ace192fc31a17e97929f1949e361361a5">
IMP::atom::Molecule::setup_particle()</a>, <a href=
"classIMP_1_1atom_1_1Molecule.html#a4d02b52443d77f6cc5ef339d526ebd01">
IMP::atom::Molecule::setup_particle()</a>, <a href=
"classIMP_1_1atom_1_1Molecule.html#aae69a4fd98b352878b7c4922bb79767f">
IMP::atom::Molecule::setup_particle()</a>, <a href=
"classIMP_1_1atom_1_1Molecule.html#ac719cd07adab9dac805eebb8d2fe51c9">
IMP::atom::Molecule::setup_particle()</a>, <a href=
"namespaceIMP_1_1spb.html#ae8957e05a946a61598e363e00de9763c">IMP::spb::create_GFP()</a>, <a href=
"namespaceIMP_1_1spb.html#abeff346a43c51e4d81a56567357880a1">IMP::spb::create_merged_protein()</a>, <a href=
"namespaceIMP_1_1spb.html#a78b1fb512e1db9c6362bb36df94293be">IMP::spb::create_protein()</a>, <a href=
"namespaceIMP_1_1spb.html#a994bd0fe39346bf4f08cbc6693a230f3">IMP::spb::create_protein()</a></td></tr>
107 <tr><td>@ref
IMP::atom::PDBSelector</td><td><a href=
"namespaceIMP_1_1atom.html#af8a720ac93e90e948bd016b3e367663d">IMP::atom::get_default_pdb_selector()</a></td></tr>
110 <tr><td>@ref
IMP::atom::ResidueType</td><td><a href=
"classIMP_1_1atom_1_1CHARMMParameters.html#ad3151d18a8caed725aede9f667ea3a8d">IMP::atom::CHARMMParameters::parse_residue_line()</a>, <a href=
"classIMP_1_1atom_1_1Residue.html#ab4ca594e94407184dadbcf3f0fe4f9c7">IMP::atom::Residue::get_residue_type()</a>, <a href=
"namespaceIMP_1_1atom.html#a7bc45846fa709afb3ea73f2e9a3ad923">
IMP::atom::get_residue_type()</a>, <a href=
"namespaceIMP_1_1atom.html#a4069a6db716b4d4a269df0aed8db5287">
IMP::atom::get_residue_type()</a></td></tr>
122 # IMP.container # {#factory_index_container}
124 <th>Class</th><th>Factories</th></tr>
129 <tr><td>@ref
IMP::container::MinimumPairRestraint</td><td><a href=
"namespaceIMP_1_1spb.html#a76fc05e5b9a81702e8c5a6d560695b08">IMP::spb::do_bipartite_mindist()</a>, <a href=
"namespaceIMP_1_1spb.html#a034798d478f68b2f5cab9cb68ac983d4">IMP::spb::do_bipartite_mindist()</a>, <a href=
"namespaceIMP_1_1spb.html#adc86ba90554da52601fc2e10c42cf016">IMP::spb::y2h_restraint()</a>, <a href=
"namespaceIMP_1_1spb.html#ab5e2abcde6e2dd7c9578b1f952808e38">IMP::spb::y2h_restraint()</a>, <a href=
"namespaceIMP_1_1spb.html#ac4ef731aae34f16b158cc7ab451ccd38">IMP::spb::y2h_restraint()</a>, <a href=
"namespaceIMP_1_1spb.html#ab16e77716acf17384a5092aa7ae86294">IMP::spb::y2h_restraint()</a></td></tr>
130 <tr><td>@ref
IMP::container::PairContainerSet</td><td><a href=
"classIMP_1_1container_1_1PairContainerSet.html#ad73b337edcd61026138832c505587c47">IMP::container::PairContainerSet::get_set()</a></td></tr>
132 <tr><td>@ref
IMP::container::QuadContainerSet</td><td><a href=
"classIMP_1_1container_1_1QuadContainerSet.html#ac2a1a54aa5fed2f2d5394c0a4734229c">IMP::container::QuadContainerSet::get_set()</a></td></tr>
133 <tr><td>@ref
IMP::container::SingletonContainerSet</td><td><a href=
"classIMP_1_1container_1_1SingletonContainerSet.html#a3053d32ea57216bae48fa420198bcf95">IMP::container::SingletonContainerSet::get_set()</a></td></tr>
134 <tr><td>@ref
IMP::container::TripletContainerSet</td><td><a href=
"classIMP_1_1container_1_1TripletContainerSet.html#a5650d9c2999046961450a95b98d1ff26">IMP::container::TripletContainerSet::get_set()</a></td></tr>
136 # IMP.core # {#factory_index_core}
138 <th>Class</th><th>Factories</th></tr>
143 <tr><td>@ref
IMP::core::DataObject</td><td><a href=
"classIMP_1_1multifit_1_1ComplementarityRestraint.html#ad6aba49b9073b20c3338cd1542ae9500">IMP::multifit::ComplementarityRestraint::get_grid_object()</a></td></tr>
146 <tr><td>@ref
IMP::core::DistancePairScore</td><td><a href=
"namespaceIMP_1_1spb.html#a516ba1dc6020a084d8cfd0a36bc9e1f3">IMP::spb::get_pair_score()</a></td></tr>
150 <tr><td>@ref
IMP::core::HierarchyTraits</td><td><a href=
"classIMP_1_1atom_1_1Hierarchy.html#ab99b617e046d339ee51649f3eeb218e3">
IMP::atom::Hierarchy::get_traits()</a>, <a href=
"classIMP_1_1core_1_1Hierarchy.html#a21ff4285e9aa013c1914f59a54f7b02c">IMP::core::Hierarchy::get_decorator_traits()</a>, <a href=
"classIMP_1_1core_1_1Hierarchy.html#ab576c86a2116587699523d583391824b">IMP::core::Hierarchy::get_traits()</a>, <a href=
"classIMP_1_1core_1_1Hierarchy.html#a0c6a95216a6e527ffee2f054faa8cdd6">IMP::core::Hierarchy::get_default_decorator_traits()</a>, <a href=
"classIMP_1_1core_1_1Hierarchy.html#aba2834d7467a9a41e0ba54d7f09044c5">
IMP::core::Hierarchy::get_default_traits()</a></td></tr>
151 <tr><td>@ref
IMP::core::IncrementalScoringFunction</td><td><a href=
"classIMP_1_1core_1_1MonteCarlo.html#a3276d3742cfacf2d09713a140cb5beeb">IMP::core::MonteCarlo::get_incremental_scoring_function()</a></td></tr>
152 <tr><td>@ref
IMP::core::MonteCarlo</td><td><a href=
"namespaceIMP_1_1spb.html#ab58214204b446b5e3784249004b1ed9d">IMP::spb::setup_SPBMonteCarlo()</a></td></tr>
154 <tr><td>@ref
IMP::core::OrderedTypePairPredicate</td><td><a href=
"classIMP_1_1npctransport_1_1Scoring.html#a5fc579835576dbc24ec3420691c47c32">IMP::npctransport::Scoring::get_ordered_type_pair_predicate()</a>, <a href=
"classIMP_1_1npctransport_1_1Scoring.html#a02a9279799eb9028568cb3048b1e229b">IMP::npctransport::Scoring::get_ordered_type_pair_predicate()</a></td></tr>
155 <tr><td>@ref
IMP::core::Provenance</td><td><a href=
"classIMP_1_1core_1_1Provenance.html#a8d9aca624be1591b6a9dfd8d2c85f964">
IMP::core::Provenance::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1Provenance.html#a09e5fa6b786c7fd7bc77d22a5b306d52">
IMP::core::Provenance::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1Provenance.html#a015c8c87998debcdbee0272e9793e42d">
IMP::core::Provenance::get_previous()</a>, <a href=
"classIMP_1_1core_1_1Provenanced.html#aa30e41dd38e3f2dc4ea11b3eb5f666ff">IMP::core::Provenanced::get_provenance()</a>, <a href=
"classIMP_1_1rmf_1_1HierarchyLoadLink.html#adb414343f11c2bf660fc4c2eb15cc85c">IMP::rmf::HierarchyLoadLink::create_one_provenance()</a>, <a href=
"namespaceIMP_1_1core.html#ab7597523d0b09bc8fa288b7261cedb69">
IMP::core::create_clone()</a></td></tr>
158 <tr><td>@ref
IMP::core::RigidBody</td><td><a href=
"classIMP_1_1core_1_1RigidBody.html#aca1a74bd404b30b7c3ebf0f072ec7cdc">
IMP::core::RigidBody::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1RigidBody.html#ade7dc68a77c0397fd7bc1711e8d85c7c">
IMP::core::RigidBody::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1RigidBody.html#a568f76829966c6cdc02e10b93a30251b">
IMP::core::RigidBody::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1RigidBody.html#a500ea9f86fa983526bff173076a42677">
IMP::core::RigidBody::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1RigidBodyMember.html#a37e8c45b0652cac4b1257e1773d9dc54">IMP::core::RigidBodyMember::get_rigid_body()</a>, <a href=
"classIMP_1_1kinematics_1_1Joint.html#a1c1015cacfabeb732fc45df58a914389">IMP::kinematics::Joint::get_child_node()</a>, <a href=
"classIMP_1_1kinematics_1_1Joint.html#a00109e3ad33f43ef6ab7b715ad529e9c">IMP::kinematics::Joint::get_parent_node()</a>, <a href=
"classIMP_1_1spb_1_1CellMover.html#a183acd439bf7dc9107feb68344f9fa74">IMP::spb::CellMover::get_rigid_bodies()</a>, <a href=
"classIMP_1_1spb_1_1PbcBoxedRigidBodyMover.html#acc877fb59301c3aa6cca9cf5fe93d547">IMP::spb::PbcBoxedRigidBodyMover::get_rigid_bodies()</a>, <a href=
"classIMP_1_1symmetry_1_1RigidBodyMover.html#ac2903b33221154299bb495fe40cf441b">IMP::symmetry::RigidBodyMover::get_rigid_bodies()</a>, <a href=
"namespaceIMP_1_1atom.html#a70ac55d293e6851c67b45d7fd55a3163">
IMP::atom::create_compatible_rigid_body()</a>, <a href=
"namespaceIMP_1_1atom.html#a1b72819ad85249bfe290fe31b4084e9e">
IMP::atom::create_rigid_body()</a>, <a href=
"namespaceIMP_1_1atom.html#a40da5b3553d98acf020078b4e435b12a">
IMP::atom::create_rigid_body()</a>, <a href=
"namespaceIMP_1_1spb.html#a767148a9e5c40841aa2c91221389e67e">IMP::spb::get_rigid_bodies()</a></td></tr>
162 <tr><td>@ref
IMP::core::SphereDistancePairScore</td><td><a href=
"namespaceIMP_1_1spb.html#a89502a2252250f76a5b47192552165ae">IMP::spb::get_sphere_pair_score()</a>, <a href=
"namespaceIMP_1_1spb.html#a42be0ddd8e2e7d54844fd1eb2aca5601">IMP::spb::get_sphere_pair_score()</a></td></tr>
164 <tr><td>@ref
IMP::core::Surface</td><td><a href=
"classIMP_1_1core_1_1Surface.html#a3edff8afcb062c7d3239dbb04f28ae97">
IMP::core::Surface::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1Surface.html#a6ddc2907dcd9dbdce2117fed65d895ac">
IMP::core::Surface::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1Surface.html#afbd39b286d5a68edf1248a602af7f18c">
IMP::core::Surface::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1Surface.html#a72a0ed69bd2ab51b3d11d95a126dd65b">
IMP::core::Surface::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1Surface.html#afc989143678b92ebf5602ab187b704a1">
IMP::core::Surface::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1Surface.html#add65d020138b1f36ab5500de75730b46">
IMP::core::Surface::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1Surface.html#aa9cea052e8fc3933182c873ad3fe3d80">
IMP::core::Surface::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1Surface.html#a04863c0756eaa91980149e00f1dc343f">
IMP::core::Surface::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1SurfaceGeometry.html#afcd83b2ec6ce2a0446a61b37ff7250b2">IMP::core::SurfaceGeometry::get_geometry()</a>, <a href=
"classIMP_1_1core_1_1SurfaceGeometryConstraint.html#a5fc8271c902740f68b79cc497fcdebc7">IMP::core::SurfaceGeometryConstraint::get_surface()</a>, <a href=
"classIMP_1_1core_1_1SurfaceMover.html#ae7f0f384e0206c26800aaa0dbc763ba3">
IMP::core::SurfaceMover::get_surface()</a></td></tr>
167 <tr><td>@ref
IMP::core::XYZ</td><td><a href=
"classIMP_1_1core_1_1XYZ.html#ae0cb94d288a442d2aec90a0f8853c597">
IMP::core::XYZ::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1XYZ.html#ac78d4427211401f07c317207a1e740c1">
IMP::core::XYZ::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1XYZ.html#a50d393f50f368b469b25f256fe6fc0de">
IMP::core::XYZ::setup_particle()</a>, <a href=
"classIMP_1_1core_1_1XYZ.html#a55c3249309694fa15ee83e09541ca5f8">
IMP::core::XYZ::setup_particle()</a>, <a href=
"classIMP_1_1kinematics_1_1DihedralAngleRevoluteJoint.html#a49f28730d11a9ae0fd7fba4c3dd069c6">IMP::kinematics::DihedralAngleRevoluteJoint::get_a()</a>, <a href=
"classIMP_1_1kinematics_1_1DihedralAngleRevoluteJoint.html#a0cd877be8bb2068c442ab972291cd705">IMP::kinematics::DihedralAngleRevoluteJoint::get_b()</a>, <a href=
"classIMP_1_1kinematics_1_1DihedralAngleRevoluteJoint.html#a8cf4011fcc06c2d764c414eca9bde7ff">IMP::kinematics::DihedralAngleRevoluteJoint::get_c()</a>, <a href=
"classIMP_1_1kinematics_1_1DihedralAngleRevoluteJoint.html#abed30c005a1b240c142aa3192324c99c">IMP::kinematics::DihedralAngleRevoluteJoint::get_d()</a></td></tr>
170 # IMP.display # {#factory_index_display}
172 <th>Class</th><th>Factories</th></tr>
174 <tr><td>@ref
IMP::display::Color</td><td><a href=
"classIMP_1_1display_1_1Colored.html#af4eb5de7d7025ed94a665ad53e22521c">IMP::display::Colored::get_color()</a>, <a href=
"classIMP_1_1display_1_1Geometry.html#a1812713ecd15573825afeca59b69e570">IMP::display::Geometry::get_color()</a>, <a href=
"classIMP_1_1display_1_1PairGeometry.html#a73836b021934ef22979a48111b9974f6">IMP::display::PairGeometry::get_color()</a>, <a href=
"classIMP_1_1display_1_1SingletonGeometry.html#a7c51782da5aced5cfa497f0543647646">IMP::display::SingletonGeometry::get_color()</a>, <a href=
"namespaceIMP_1_1display.html#a8873da49642f951ec86570656e98e908">
IMP::display::get_jet_color()</a>, <a href=
"namespaceIMP_1_1display.html#ae15042a6bb4f4548ec2876ceddfd3165">
IMP::display::get_hot_color()</a>, <a href=
"namespaceIMP_1_1display.html#a3ea1c11940d14e4ac022768e96514dff">
IMP::display::get_rgb_color()</a>, <a href=
"namespaceIMP_1_1display.html#abd278fa3123b329c7fe1784b02f4ca31">
IMP::display::get_gray_color()</a>, <a href=
"namespaceIMP_1_1display.html#ad982e4a6182db9aa8157f3fc020da33f">
IMP::display::get_gnuplot_color()</a>, <a href=
"namespaceIMP_1_1display.html#a7139e3c2ffdf998ca304a7f01e6e237e">
IMP::display::get_display_color()</a>, <a href=
"namespaceIMP_1_1display.html#ada2a3156a15dd0217840bfc8675724d8">
IMP::display::get_interpolated_rgb()</a></td></tr>
178 <tr><td>@ref
IMP::display::Geometry</td><td><a href=
"classIMP_1_1display_1_1WriteOptimizerState.html#ab7308b24bd03e46f14de9693ab613535">IMP::display::WriteOptimizerState::get_geometry()</a>, <a href=
"classIMP_1_1npctransport_1_1SimulationData.html#a9e57336bb6c67d20ba952bdf7e2b606d">IMP::npctransport::SimulationData::get_static_geometry()</a></td></tr>
185 <tr><td>@ref
IMP::display::Writer</td><td><a href=
"classIMP_1_1display_1_1WriterAdaptor.html#afe4e8faa43b0dcc21116c1b0e2c4b252">IMP::display::WriterAdaptor::get_writer()</a>, <a href=
"classIMP_1_1display_1_1WriterAdaptor.html#a108d1a11ac10a1f30477d9209779f9d6">IMP::display::WriterAdaptor::operator->()</a>, <a href=
"namespaceIMP_1_1display.html#a55414a3681ffd79c126fabdbf13abb2d">
IMP::display::create_writer()</a></td></tr>
187 # IMP.domino # {#factory_index_domino}
189 <th>Class</th><th>Factories</th></tr>
190 <tr><td>@ref
IMP::domino::Assignment</td><td><a href=
"classIMP_1_1domino_1_1AssignmentContainer.html#aa81ef13a668c41da618439be20b6f2aa">IMP::domino::AssignmentContainer::get_assignment()</a>, <a href=
"classIMP_1_1domino_1_1CappedAssignmentContainer.html#a6dbc1dfc0bfb89a2574fa0aeb8c73dc7">IMP::domino::CappedAssignmentContainer::get_assignment()</a>, <a href=
"classIMP_1_1domino_1_1HeapAssignmentContainer.html#ac55e0371c4e26e56dbdbca445a68ae94">IMP::domino::HeapAssignmentContainer::get_assignment()</a>, <a href=
"classIMP_1_1domino_1_1ListAssignmentContainer.html#a270c0846741f2dd93ad6354143d6df14">IMP::domino::ListAssignmentContainer::get_assignment()</a>, <a href=
"classIMP_1_1domino_1_1Order.html#a5073cfaca05e214fb48cc38d76f2df51">IMP::domino::Order::get_subset_ordered()</a>, <a href=
"classIMP_1_1domino_1_1PackedAssignmentContainer.html#aebe9e10ef7d4deb7838107299c3e50ea">IMP::domino::PackedAssignmentContainer::get_assignment()</a>, <a href=
"classIMP_1_1domino_1_1RangeViewAssignmentContainer.html#a23e721abb0c1663ffd5371429bdbbf31">IMP::domino::RangeViewAssignmentContainer::get_assignment()</a>, <a href=
"classIMP_1_1domino_1_1ReadAssignmentContainer.html#ab47cc3fdca3d5944feca00a0c2126f2e">IMP::domino::ReadAssignmentContainer::get_assignment()</a>, <a href=
"classIMP_1_1domino_1_1ReadHDF5AssignmentContainer.html#a41f70ad327cee3330443e35a48167d67">IMP::domino::ReadHDF5AssignmentContainer::get_assignment()</a>, <a href=
"classIMP_1_1domino_1_1SampleAssignmentContainer.html#a8d3cb4c2cc32f4a8f5199a18033cbca1">IMP::domino::SampleAssignmentContainer::get_assignment()</a>, <a href=
"classIMP_1_1domino_1_1Slice.html#ab3c699a06268f2fa405c296149c4515b">IMP::domino::Slice::get_sliced()</a>, <a href=
"classIMP_1_1domino_1_1WriteAssignmentContainer.html#a1a1945c99b7a742323dd516df4fd88cf">IMP::domino::WriteAssignmentContainer::get_assignment()</a>, <a href=
"classIMP_1_1domino_1_1WriteHDF5AssignmentContainer.html#a955539a2e20a90cc06b9d7afa94ac07b">IMP::domino::WriteHDF5AssignmentContainer::get_assignment()</a>, <a href=
"namespaceIMP_1_1domino.html#abd8a69ba2cc2b8fea2f49c99189d8711">
IMP::domino::get_nearest_assignment()</a></td></tr>
191 <tr><td>@ref
IMP::domino::AssignmentsTable</td><td><a href=
"classIMP_1_1domino_1_1DiscreteSampler.html#a4e75f4975c1009934c6c594f93ca31e1">IMP::domino::DiscreteSampler::get_assignments_table_to_use()</a></td></tr>
192 <tr><td>@ref
IMP::domino::ParticleStates</td><td><a href=
"classIMP_1_1domino_1_1ParticleStatesTable.html#aeeaf96e9b2425dae382e391e2a0dfa01">IMP::domino::ParticleStatesTable::get_particle_states()</a></td></tr>
193 <tr><td>@ref
IMP::domino::ParticleStatesTable</td><td><a href=
"classIMP_1_1domino_1_1DiscreteSampler.html#add8262de16a05f7912617cb655f37831">IMP::domino::DiscreteSampler::get_particle_states_table()</a>, <a href=
"classIMP_1_1multifit_1_1ProteomicsEMAlignmentAtomic.html#af4484a70172a58bed5eedfe9a42a0705">IMP::multifit::ProteomicsEMAlignmentAtomic::set_particle_states_table()</a></td></tr>
195 <tr><td>@ref
IMP::domino::Subset</td><td><a href=
"classIMP_1_1domino_1_1ParticleStatesTable.html#ad199188132a371bdf4d086cc82ad2735">
IMP::domino::ParticleStatesTable::get_subset()</a>, <a href=
"classIMP_1_1domino_1_1RestraintCache.html#abfeee91ee10e51b2dcf53e0daaf3fd37">IMP::domino::RestraintCache::get_subset()</a>, <a href=
"classIMP_1_1domino_1_1Slice.html#a2f4e028d276be06d17293141b9a472c1">IMP::domino::Slice::get_sliced()</a>, <a href=
"namespaceIMP_1_1domino.html#a1e91ca287b91fd6144aeeff14960c14a">IMP::domino::get_difference()</a>, <a href=
"namespaceIMP_1_1domino.html#a399d7344a0696fbab4a6ca6c2796157b">IMP::domino::get_intersection()</a>, <a href=
"namespaceIMP_1_1domino.html#adc940e96eb944fe259a8fba40830a251">IMP::domino::get_union()</a></td></tr>
196 <tr><td>@ref
IMP::domino::SubsetFilter</td><td><a href=
"classIMP_1_1domino_1_1EqualitySubsetFilterTable.html#a0e41d167243f8bb91c8ebdf1e68fa66b">
IMP::domino::EqualitySubsetFilterTable::get_subset_filter()</a>, <a href=
"classIMP_1_1domino_1_1EquivalenceAndExclusionSubsetFilterTable.html#a313e21c2ac19d8a2520391cc7a728692">
IMP::domino::EquivalenceAndExclusionSubsetFilterTable::get_subset_filter()</a>, <a href=
"classIMP_1_1domino_1_1EquivalenceSubsetFilterTable.html#a88463fb614a2dcb2b155e62b77d64a23">
IMP::domino::EquivalenceSubsetFilterTable::get_subset_filter()</a>, <a href=
"classIMP_1_1domino_1_1ExclusionSubsetFilterTable.html#ab21a7dbe5fd65a957b80d37cecb05e10">
IMP::domino::ExclusionSubsetFilterTable::get_subset_filter()</a>, <a href=
"classIMP_1_1domino_1_1ListSubsetFilterTable.html#a324e1729565ebd6513a5357b3f8ca424">
IMP::domino::ListSubsetFilterTable::get_subset_filter()</a>, <a href=
"classIMP_1_1domino_1_1MinimumRestraintScoreSubsetFilterTable.html#a04cfce4e5e82589e9a958780ec276853">
IMP::domino::MinimumRestraintScoreSubsetFilterTable::get_subset_filter()</a>, <a href=
"classIMP_1_1domino_1_1PairListSubsetFilterTable.html#abca0f6c8d5df498eed912ef7ccfa1268">
IMP::domino::PairListSubsetFilterTable::get_subset_filter()</a>, <a href=
"classIMP_1_1domino_1_1ProbabilisticSubsetFilterTable.html#ad96b79309670a8ed32b79f69c2ac15de">
IMP::domino::ProbabilisticSubsetFilterTable::get_subset_filter()</a>, <a href=
"classIMP_1_1domino_1_1RestraintScoreSubsetFilterTable.html#afe6c067399f81400198864d011a90efb">
IMP::domino::RestraintScoreSubsetFilterTable::get_subset_filter()</a>, <a href=
"classIMP_1_1domino_1_1SubsetFilterTable.html#ac455bb060804addf2274c8304a2aa5fd">
IMP::domino::SubsetFilterTable::get_subset_filter()</a>, <a href=
"classIMP_1_1em2d_1_1DistanceFilterTable.html#adca029b4278e5e58f6e1142ba85cc2bc">
IMP::em2d::DistanceFilterTable::get_subset_filter()</a>, <a href=
"classIMP_1_1example_1_1ExampleSubsetFilterTable.html#a8fe7c10211739dd503ff88579ad18434">
IMP::example::ExampleSubsetFilterTable::get_subset_filter()</a></td></tr>
197 <tr><td>@ref
IMP::domino::SubsetFilterTable</td><td><a href=
"classIMP_1_1domino_1_1DiscreteSampler.html#ae77e8ad6a8313ae2970f192df444cf85">IMP::domino::DiscreteSampler::get_subset_filter_table()</a></td></tr>
199 # IMP.em # {#factory_index_em}
201 <th>Class</th><th>Factories</th></tr>
203 <tr><td>@ref
IMP::em::DensityMap</td><td><a href=
"classIMP_1_1em_1_1DensityMap.html#a3cbce8f549241438b9e02fbcc5e9f47f">
IMP::em::DensityMap::get_cropped()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#a22a4b07290dee25e91a77157ebf4393d">
IMP::em::DensityMap::get_cropped()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#a152abc77a04a0eddaedca4a61643c7e4">
IMP::em::DensityMap::get_cropped()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#a8f5c966aab9fb6fa41e89500efc7f7e3">
IMP::em::DensityMap::pad_margin()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#a38ed273d99248a3258e9ed33676cd2d6">
IMP::em::DensityMap::create_density_map()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#ae4349c6f32dd2bd503c4d1bc0dffbb2f">
IMP::em::DensityMap::create_density_map()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#a54fa7df010fd43d4d0d13f71fa77b03d">
IMP::em::DensityMap::get_binarized_interior()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#a08ef3f70aec3b1d6e01a2e72149e4902">
IMP::em::DensityMap::get_resampled()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#a136741fcac5174f8af99e7aac939e9f9">
IMP::em::DensityMap::get_transformed()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#afea835c4ddafaf25568cc64c66bcc3f1">
IMP::em::DensityMap::get_transformed()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#aa7ad31965184a36215f80816a2749662">IMP::em::DensityMap::read_map()</a>, <a href=
"classIMP_1_1em_1_1DensityMap.html#a1e7a07ba713fd32af20b67ca694cc35f">IMP::em::DensityMap::read_map()</a>, <a href=
"classIMP_1_1multifit_1_1FFTFitting.html#a37d65339d5125709922ec82eba2ce9ed">IMP::multifit::FFTFitting::crop_margin()</a>, <a href=
"namespaceIMP_1_1bayesianem.html#aac1c7654b58f288053040fd246060d07">IMP::bayesianem::get_masked_map()</a>, <a href=
"namespaceIMP_1_1bayesianem.html#a07e08b6a53f777d0e35e7b6ff6024ee7">IMP::bayesianem::get_sub_map()</a>, <a href=
"namespaceIMP_1_1cnmultifit.html#a3733609ff3265bd070779045acf03fca">IMP::cnmultifit::build_cn_dens_assembly()</a>, <a href=
"namespaceIMP_1_1em.html#a7e08fd743778d6b18b8e759bea705454">
IMP::em::bayesem3d_get_density_from_particle()</a>, <a href=
"namespaceIMP_1_1em.html#a1c88424c8b24a5802ef048175e22787b">
IMP::em::binarize()</a>, <a href=
"namespaceIMP_1_1em.html#aa873c569e58e5c5d66dac1c0420f3e6c">
IMP::em::create_density_map()</a>, <a href=
"namespaceIMP_1_1em.html#ad6586b38abb58a2ebc6b64b10f60f734">
IMP::em::create_density_map()</a>, <a href=
"namespaceIMP_1_1em.html#ace9a6d63b63146fcaac428d8995ade7b">
IMP::em::create_density_map()</a>, <a href=
"namespaceIMP_1_1em.html#ae7eacf1de1781ba22d2169b635d87753">
IMP::em::get_max_map()</a>, <a href=
"namespaceIMP_1_1em.html#a8dfa355f085d452c5636987d4f8ab956">
IMP::em::get_segment()</a>, <a href=
"namespaceIMP_1_1em.html#aa92d0be9d42aa9d9b7a20796baacbf3b">
IMP::em::get_segment()</a>, <a href=
"namespaceIMP_1_1em.html#a94fc09c5491718e3e0e61b2c4ff04f8f">
IMP::em::get_segment_by_masking()</a>, <a href=
"namespaceIMP_1_1em.html#a3078e4c77b9e81fa61b8222934185d1e">
IMP::em::get_threshold_map()</a>, <a href=
"namespaceIMP_1_1em.html#a7ca59d2a3aa688060c280efa250d80a7">
IMP::em::interpolate_map()</a>, <a href=
"namespaceIMP_1_1em.html#ae6c068669daa6977fb4a6e9800d79b44">
IMP::em::mask_and_norm()</a>, <a href=
"namespaceIMP_1_1em.html#a0337abc873be82054e0b4061912cf0dc">
IMP::em::multiply()</a>, <a href=
"namespaceIMP_1_1multifit.html#a3359231b0601df5803958afcd8d93184">IMP::multifit::create_hit_map()</a>, <a href=
"namespaceIMP_1_1multifit.html#ae2668faf165711107665d494a73351a2">IMP::multifit::grid2map()</a>, <a href=
"namespaceIMP_1_1multifit.html#a8528245410468cfc40ab674d0ef64d70">
IMP::multifit::remove_background()</a></td></tr>
204 <tr><td>@ref
IMP::em::FittingSolutions</td><td><a href=
"namespaceIMP_1_1cnmultifit.html#a6067aedfd378547038d133f84bb820e3">
IMP::cnmultifit::fit_cn_assembly()</a>, <a href=
"namespaceIMP_1_1cnmultifit.html#a1b5327db66abe2f5bc1712f1013a4436">
IMP::cnmultifit::fit_cn_assembly()</a>, <a href=
"namespaceIMP_1_1cnmultifit.html#a326d661ede67dfeb87070ee6447ad678">IMP::cnmultifit::symmetry_local_fitting()</a>, <a href=
"namespaceIMP_1_1em.html#a4350b15571abb634d2285ce9114a5725">
IMP::em::compute_fitting_scores()</a>, <a href=
"namespaceIMP_1_1em.html#ab8beedad8915dcd1aa22b5ba75a61439">
IMP::em::compute_fitting_scores()</a>, <a href=
"namespaceIMP_1_1em.html#a300a1ede18ac26749a961beca4c971e3">
IMP::em::local_rigid_fitting()</a>, <a href=
"namespaceIMP_1_1em.html#a46543f4001a8c31276003433db00f776">
IMP::em::local_rigid_fitting_around_point()</a>, <a href=
"namespaceIMP_1_1em.html#a729f3b19106724e0dbc8c7e98336ff64">
IMP::em::local_rigid_fitting_around_points()</a>, <a href=
"namespaceIMP_1_1em.html#a2092ec68df3aaeeef8daee59353d0327">
IMP::em::local_rigid_fitting_grid_search()</a>, <a href=
"namespaceIMP_1_1multifit.html#a2a2ca63805bc102fbf07209c85e2ce44">IMP::multifit::convert_multifit_to_em_format()</a>, <a href=
"namespaceIMP_1_1multifit.html#a45c8385d6183240ec7216ae97374c7a9">
IMP::multifit::pca_based_rigid_fitting()</a>, <a href=
"namespaceIMP_1_1multifit.html#afdf294ea4f4b41a0fa4da41f6c95e32c">
IMP::multifit::pca_based_rigid_fitting()</a></td></tr>
206 <tr><td>@ref
IMP::em::KernelParameters</td><td><a href=
"classIMP_1_1em_1_1SampledDensityMap.html#a583657d98547c95dceb6130ea3bf1e02">IMP::em::SampledDensityMap::get_kernel_params()</a></td></tr>
211 # IMP.em2d # {#factory_index_em2d}
213 <th>Class</th><th>Factories</th></tr>
218 # IMP.example # {#factory_index_example}
220 <th>Class</th><th>Factories</th></tr>
223 # IMP.isd # {#factory_index_isd}
225 <th>Class</th><th>Factories</th></tr>
226 <tr><td>@ref
IMP::isd::FretRestraint</td><td><a href=
"namespaceIMP_1_1spb.html#a8a576f8cb8828bb3f7bf1853ed9e9f21">IMP::spb::fret_restraint()</a>, <a href=
"namespaceIMP_1_1spb.html#acfc148835c56484d4e992d107aa55bee">IMP::spb::fret_restraint()</a>, <a href=
"namespaceIMP_1_1spb.html#abdbc7bac876d7baf8c690b92ed9d5208">IMP::spb::fret_restraint()</a></td></tr>
227 <tr><td>@ref
IMP::isd::MolecularDynamics</td><td><a href=
"classIMP_1_1isd_1_1HybridMonteCarlo.html#a126896181fdc35049811f2a1cd3d9980">IMP::isd::HybridMonteCarlo::get_md()</a>, <a href=
"classIMP_1_1isd_1_1MolecularDynamicsMover.html#a8536ffc5917d63f065ee68239b450e93">IMP::isd::MolecularDynamicsMover::get_md()</a></td></tr>
233 # IMP.kinematics # {#factory_index_kinematics}
235 <th>Class</th><th>Factories</th></tr>
237 <tr><td>@ref
IMP::kinematics::DOFValues</td><td><a href=
"classIMP_1_1kinematics_1_1DOFsSampler.html#a6b23a655042253363991b7f1ecad808b">
IMP::kinematics::DOFsSampler::get_sample()</a>, <a href=
"classIMP_1_1kinematics_1_1DOFsSampler.html#ad2f36b799915187b7e3b1b5178f45258">IMP::kinematics::DOFsSampler::do_get_sample()</a>, <a href=
"classIMP_1_1kinematics_1_1DirectionalDOF.html#a377501664554376eb3c305654a66d434">IMP::kinematics::DirectionalDOF::get_dofs_values()</a>, <a href=
"classIMP_1_1kinematics_1_1FibrilSampler.html#aecc788cadbc346390f1ebd37fa4184a3">IMP::kinematics::FibrilSampler::do_get_sample()</a>, <a href=
"classIMP_1_1kinematics_1_1LocalPlanner.html#aa3e2c3f33045da082ccbc0c57cf98fae">IMP::kinematics::LocalPlanner::plan()</a>, <a href=
"classIMP_1_1kinematics_1_1PathLocalPlanner.html#a67f80137a9768983eb7c54911f00e158">
IMP::kinematics::PathLocalPlanner::plan()</a>, <a href=
"classIMP_1_1kinematics_1_1RRT_1_1RRTNode.html#a854857cf2007eff341b7a608d55854b5">IMP::kinematics::RRT::RRTNode::get_DOFValues()</a>, <a href=
"classIMP_1_1kinematics_1_1UniformBackboneSampler.html#aadd2aaba7cd96eeb0a674cf197428881">IMP::kinematics::UniformBackboneSampler::do_get_sample()</a></td></tr>
238 <tr><td>@ref
IMP::kinematics::DihedralAngleRevoluteJoint</td><td><a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#aec77aae9528482853d752645611830d0">IMP::kinematics::ProteinKinematics::get_chi1_joint()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#a297106a361a557f6005bc4913e124f8a">IMP::kinematics::ProteinKinematics::get_chi2_joint()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#a75a2449d9d48411cd4a1b4b0c1547b82">IMP::kinematics::ProteinKinematics::get_chi3_joint()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#a40623eb6c48ec11e7769328d1e04be66">IMP::kinematics::ProteinKinematics::get_chi4_joint()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#a696922070461ecdb785fa0d94a97c927">IMP::kinematics::ProteinKinematics::get_chi5_joint()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#a181d087b1a248cfca6d9174bce650a82">IMP::kinematics::ProteinKinematics::get_joint()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#ae04568da36217aeff08f590a0b2de28d">IMP::kinematics::ProteinKinematics::get_other_joint()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#a175fe14ea73c95932e547b64dcd6c032">IMP::kinematics::ProteinKinematics::get_phi_joint()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#a3bfc396bdc667f1d73df79025a3e9292">IMP::kinematics::ProteinKinematics::get_psi_joint()</a></td></tr>
239 <tr><td>@ref
IMP::kinematics::Joint</td><td><a href=
"classIMP_1_1kinematics_1_1KinematicForest.html#a4f4f75ae4464f9238edbd4f9f53da211">
IMP::kinematics::KinematicForest::add_edge()</a>, <a href=
"classIMP_1_1kinematics_1_1KinematicNode.html#a40ad561042d38de8f17e9732deeac344">IMP::kinematics::KinematicNode::get_in_joint()</a></td></tr>
240 <tr><td>@ref
IMP::kinematics::KinematicForest</td><td><a href=
"classIMP_1_1kinematics_1_1Joint.html#ace40f33493218a6909b5c5ec3747210e">IMP::kinematics::Joint::get_owner_kf()</a>, <a href=
"classIMP_1_1kinematics_1_1KinematicNode.html#afb08a98ef2a09bbfde3f86f65d886eb6">IMP::kinematics::KinematicNode::get_owner()</a>, <a href=
"classIMP_1_1kinematics_1_1ProteinKinematics.html#a7d362a387254728e698107b187ccabc9">
IMP::kinematics::ProteinKinematics::get_kinematic_forest()</a></td></tr>
242 <tr><td>@ref
IMP::kinematics::RRT::RRTNode</td><td><a href=
"classIMP_1_1kinematics_1_1RRT.html#a5068d0aa8c1a96b967a8f59e4800811f">IMP::kinematics::RRT::get_q_near()</a>, <a href=
"classIMP_1_1kinematics_1_1RRT_1_1RRTNode.html#ae53fc915b7bebd5809c99ffda6719f5c">IMP::kinematics::RRT::RRTNode::get_edges()</a></td></tr>
244 # IMP.misc # {#factory_index_misc}
246 <th>Class</th><th>Factories</th></tr>
249 # IMP.multifit # {#factory_index_multifit}
251 <th>Class</th><th>Factories</th></tr>
252 <tr><td>@ref
IMP::multifit::AnchorsData</td><td><a href=
"classIMP_1_1multifit_1_1ProteinsAnchorsSamplingSpace.html#a749cb63890e572b59c9b0b5e5e4075c1">IMP::multifit::ProteinsAnchorsSamplingSpace::get_anchors()</a>, <a href=
"namespaceIMP_1_1multifit.html#aedc64c26eefe139ef34e5cce89d13a51">IMP::multifit::molecule2anchors()</a>, <a href=
"namespaceIMP_1_1multifit.html#a1311b5448ea5d757a085c959a77e5fc2">IMP::multifit::read_anchors_data()</a></td></tr>
253 <tr><td>@ref
IMP::multifit::AssemblyHeader</td><td><a href=
"classIMP_1_1multifit_1_1SettingsData.html#ab907ede30470a45d77126d0ed631868e">IMP::multifit::SettingsData::get_assembly_header()</a></td></tr>
254 <tr><td>@ref
IMP::multifit::ComponentHeader</td><td><a href=
"classIMP_1_1multifit_1_1SettingsData.html#a64cd483a817da67778deb9fbbb0d90a9">IMP::multifit::SettingsData::get_component_header()</a></td></tr>
255 <tr><td>@ref
IMP::multifit::Ensemble</td><td><a href=
"namespaceIMP_1_1multifit.html#a990fc248adf46233d96011ab77130eec">IMP::multifit::load_ensemble()</a></td></tr>
258 <tr><td>@ref
IMP::multifit::ProteomicsData</td><td><a href=
"classIMP_1_1multifit_1_1ProteinsAnchorsSamplingSpace.html#ab6cfebe16d6ea30f264e390f01e73890">IMP::multifit::ProteinsAnchorsSamplingSpace::get_proteomics_data()</a>, <a href=
"namespaceIMP_1_1multifit.html#aac05dae9e06cb11ef27e820cf54be014">IMP::multifit::get_partial_proteomics_data()</a>, <a href=
"namespaceIMP_1_1multifit.html#ae4470dd25cd94e09c145556b62fd54b7">
IMP::multifit::read_proteomics_data()</a></td></tr>
261 # IMP.npctransport # {#factory_index_npctransport}
263 <th>Class</th><th>Factories</th></tr>
274 # IMP.pmi # {#factory_index_pmi}
276 <th>Class</th><th>Factories</th></tr>
281 # IMP.pmi1 # {#factory_index_pmi1}
283 <th>Class</th><th>Factories</th></tr>
288 # IMP.rmf # {#factory_index_rmf}
290 <th>Class</th><th>Factories</th></tr>
293 # IMP.rotamer # {#factory_index_rotamer}
295 <th>Class</th><th>Factories</th></tr>
298 # IMP.saxs # {#factory_index_saxs}
300 <th>Class</th><th>Factories</th></tr>
301 <tr><td>@ref
IMP::saxs::DeltaDistributionFunction</td><td><a href=
"classIMP_1_1saxs_1_1DerivativeCalculator.html#a9ebc76cc8dbdb3d16457bc4870f76a5e">IMP::saxs::DerivativeCalculator::precompute_derivative_helpers()</a></td></tr>
302 <tr><td>@ref
IMP::saxs::FitParameters</td><td><a href=
"classIMP_1_1saxs_1_1ProfileFitter.html#afaa5cad2558d184e54d2255880ab156e">
IMP::saxs::ProfileFitter::fit_profile()</a>, <a href=
"classIMP_1_1saxs_1_1ProfileFitter.html#aac32d65c66c88a72e95c19661698ed90">IMP::saxs::ProfileFitter::search_fit_parameters()</a></td></tr>
305 <tr><td>@ref
IMP::saxs::WeightedFitParameters</td><td><a href=
"classIMP_1_1multi__state_1_1MultiStateModelScore.html#a2b494cabfb945524b92cfee90f7605fa">IMP::multi_state::MultiStateModelScore::get_fit_parameters()</a>, <a href=
"classIMP_1_1multi__state_1_1MultiStateModelScore.html#aa28fdf86378765d2cb980f811196a94e">IMP::multi_state::MultiStateModelScore::get_fit_parameters()</a>, <a href=
"classIMP_1_1multi__state_1_1SAXSMultiStateModelScore.html#ac186d743882728f4cab89e5a2bf46f75">IMP::multi_state::SAXSMultiStateModelScore::get_fit_parameters()</a>, <a href=
"classIMP_1_1multi__state_1_1SAXSMultiStateModelScore.html#a58d50dfee291431c810215e3347cf1b9">IMP::multi_state::SAXSMultiStateModelScore::get_fit_parameters()</a>, <a href=
"classIMP_1_1saxs_1_1WeightedProfileFitter.html#ac48627aa0a274cc70594d4ebc01195e8">
IMP::saxs::WeightedProfileFitter::fit_profile()</a>, <a href=
"classIMP_1_1saxs_1_1WeightedProfileFitter.html#aa7fe6fec9fccc23b98b3c3c1742556f5">IMP::saxs::WeightedProfileFitter::search_fit_parameters()</a></td></tr>
307 # IMP.spb # {#factory_index_spb}
309 <th>Class</th><th>Factories</th></tr>
310 <tr><td>@ref
IMP::spb::EM2DRestraint</td><td><a href=
"namespaceIMP_1_1spb.html#ae9d0b23db782452a116f737439adcd0f">IMP::spb::em2d_restraint()</a>, <a href=
"namespaceIMP_1_1spb.html#a381a514f0f058cbd0c02028c3f2654ca">IMP::spb::em2d_restraint()</a></td></tr>
311 <tr><td>@ref
IMP::spb::HelixDecorator</td><td><a href=
"classIMP_1_1spb_1_1HelixDecorator.html#a3bdcdea309db55d9a67bc6d2ed12a5ea">IMP::spb::HelixDecorator::setup_particle()</a></td></tr>
313 # IMP.statistics # {#factory_index_statistics}
315 <th>Class</th><th>Factories</th></tr>
FitParameters fit_profile(Profile *partial_profile, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=false, const std::string fit_file_name="") const
fit experimental profile through optimization of c1 and c2 parameters
const SpherePatch3D & get_sphere_patch_3d_geometry(const SpherePatch3D &g)
algebra::Segment3D get_segment_starting_at(const Vector3D &v, double d) const
Get segment of a given length starting at a point.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Symmetric setup_particle(Model *m, ParticleIndex pi, Float symmetric)
Particle * get_particle(ParticleIndex p) const
Get the particle from an index.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::Rotation3D get_orientation(unsigned int i) const
Returns the orientation corresponding to the state i.
static Switching setup_particle(Model *m, ParticleIndex pi)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
AtomType add_atom_type(std::string name, Element e)
Create a new AtomType.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
An ensemble of fitting solutions.
PartitionalClusteringWithCenter * create_lloyds_kmeans(Embedding *embedding, unsigned int k, unsigned int iterations)
Rotation3D get_rotation_about_normalized_axis(const Vector3D &axis_norm, double angle)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Particles create_dihedrals(Particles bonds) const
Auto-generate Dihedral particles from the passed list of Bond particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Nuisance setup_particle(Model *m, ParticleIndex pi)
Rotation2D get_inverse() const
Return the matrix for the inverse rotation.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexes get_all_possible_indexes() const
Get contained particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Restraint * create_decomposition() const
Decompose this restraint into constituent terms.
Hierarchy read_pdb_or_mmcif(TextInput input, Model *model, PDBSelector *selector=get_default_pdb_selector(), bool select_first_model=true)
Read all the molecules in the first model of the PDB or mmCIF file.
The ideal topology of a single residue.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Abstract class for scoring object(s) of type ParticleIndexPair.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
The base class for simulators.
GridIndexD< D > get_index(const ExtendedGridIndexD< D > &v) const
Convert a ExtendedIndex into a real Index if possible.
A shared container for Pairs.
Transformation2D get_transformation_aligning_pair(const Vector2Ds &set_from, const Vector2Ds &set_to)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static CHARMMAtom setup_particle(Model *m, ParticleIndex pi, String charmm_type)
static Charged setup_particle(Model *m, ParticleIndex pi, Float charge)
static Resolution setup_particle(Model *m, ParticleIndex pi, Float resolution)
CHARMMParameters * get_heavy_atom_CHARMM_parameters()
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
WeakPointer< IMP::atom::Simulator > get_owner() const
returns the simulator that was declared in the constructor or by
ParticlesTemp get_optimizable_beads()
Hierarchy read_mmcif(TextInput input, Model *model, PDBSelector *selector=get_default_pdb_selector(), bool select_first_model=true)
Read all the molecules in the first model of the mmCIF file.
static StructureSource setup_particle(Model *m, ParticleIndex pi, std::string source_id, std::string source_chain_id)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::Transformation3D get_transformation_aligning_first_to_second(XYZsOrVector3ds a, XYZsOrVector3ds b)
const DensityHeader * get_header() const
Returns a read-only pointer to the header of the map.
RegistrationResult get_final_registration() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator to associate a particle with a part of a protein.
static Provenance setup_particle(Model *m, ParticleIndex pi)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
atom::Hierarchies get_fg_chains() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static CenterOfMass setup_particle(Model *m, ParticleIndex pi, ParticleIndexesAdaptor members)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Dihedral setup_particle(Model *m, ParticleIndex pi, core::XYZ a, core::XYZ b, core::XYZ c, core::XYZ d)
ExtendedGridIndexD< D > get_end_index() const
Get the past-end voxel.
Add weights to a particle.
Chain get_chain(Hierarchy h)
Get the containing chain or Chain() if there is none.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchy get_parent() const
Get the parent particle.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static CustomXYZR setup_particle(Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits())
atom::Hierarchy get_root_of_type(core::ParticleType type) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Transporting setup_particle(Model *m, ParticleIndex pi, bool is_last_entry_from_top=false)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator to associate a particle with a part of a protein/DNA/RNA.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Vector< AtomTypes > get_chi_dihedral_atom_types(ResidueType rt)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ExtendedGridIndexD< D > get_maximum_extended_index() const
Return the index of the maximal cell.
RestraintInfo * get_static_info() const
ParticlesTemp get_non_optimizable_beads()
static Gaussian setup_particle(Model *m, ParticleIndex pi)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Atoms get_phi_dihedral_atoms(Residue rd)
Return the atoms comprising the phi dihedral.
virtual IMP::domino::SubsetFilter * get_subset_filter(const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
DensityMap * interpolate_map(DensityMap *in_map, double new_spacing)
Return a new map with an updated spacing.
Hierarchy create_hierarchy(Model *model) const
Create a new Hierarchy in the given model using this topology.
Simple implementation of lines in 3D.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Particle * get_slab_particle() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Particles density2particles(DensityMap *dmap, Float threshold, Model *m, int step=1)
Convert a density grid to a set of particles.
Direction get_direction() const
Get the surface being moved.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Score based on the min or max PairScore over a set.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::PairScore const * get_predicate_pair_score(core::ParticleType t1, core::ParticleType t2) const
returns the pair score for particles of types t1 and t2 */
static RigidBodyDiffusion setup_particle(Model *m, ParticleIndex pi)
Track creation of a system fragment from running some software.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Rotation3D get_rotation_from_x_y_axes(const Vector3D &x, const Vector3D &y)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
const VectorD< D > & get_corner(unsigned int i) const
For 0 return lower corner and for 1, the upper corner.
const Transformation3D & get_transformation_from() const
Return the transformation from global to local coordinates.
Storage of proteomics data.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
FGChain * create_fg_chain(IMP::npctransport::SimulationData *sd, atom::Hierarchy parent, const ::npctransport_proto::Assignment_FGAssignment &fg_data, display::Color c)
virtual ParticleIndexes get_indexes() const =0
BoundingBoxD< 3 > get_bounding_box(const Plane3D &g)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticlesTemp create_particles(RMF::FileConstHandle fh, Model *m)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::BoundingBoxD< 3 > get_bounding_box(const DensityMap *m, Float threshold)
Get the bounding box for a map.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
atom::Hierarchies create_hierarchies(RMF::FileConstHandle fh, Model *m)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchy create_clone(Hierarchy d)
Clone the Hierarchy.
Particles add_bonds(Hierarchy hierarchy) const
Add bonds to the given Hierarchy using this topology, and return them.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DensityMap * bayesem3d_get_density_from_particle(DensityMap *em, const IMP::ParticlesTemp &ps, double resolution, const double window_size=1.0)
A decorator for an angle between two directions.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static const HierarchyTraits & get_default_traits()
Get the default hierarchy traits.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchy create_simplified_from_volume(Hierarchy h, double resolution)
A connection (bond, angle, dihedral) between some number of endpoints.
Rotation3D get_rotation_from_fixed_xyz(double xr, double yr, double zr)
Initialize a rotation in x-y-z order from three angles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DensityMap * pad_margin(int mrg_x, int mrg_y, int mrg_z, float val=0.0)
Create a new padded map.
virtual IMP::domino::SubsetFilter * get_subset_filter(const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::Particle * create(std::string name="")
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual RestraintInfo * get_static_info() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Add resolution to a particle.
algebra::BoundingBoxD< 3 > get_bounding_box(const Hierarchy &h)
Get a bounding box for the Hierarchy.
Represent an ellipsoid in 3D.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
VectorD< 3 > get_random_vector_on_unit_sphere()
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator for a particle with x,y,z coordinates and a radius.
static Provenanced setup_particle(Model *m, ParticleIndex pi, Provenance p)
static Atom setup_particle(Model *m, ParticleIndex pi, Atom other)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Simple RRT node implementation.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Vector< char > write_particles_to_buffer(const ParticlesTemp &particles, const FloatKeys &keys)
return a binary buffer with the data
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual SubsetFilter * get_subset_filter(const Subset &s, const Subsets &prior_subsets) const =0
algebra::ReferenceFrame3D get_initial_reference_frame(Model *m, const ParticleIndexes &pis)
virtual ParticleIndexes get_refined_indexes(Model *m, ParticleIndex) const
Returns the fixed set of particles, as indexes.
static Fragment setup_particle(Model *m, ParticleIndex pi)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Particles add_dihedrals(Hierarchy hierarchy) const
Add dihedrals to the given Hierarchy using this topology, and return them.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Represent a rotation in 2D space.
SimulationData * get_sd()
Particles & get_beads_byref()
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A particle that has an associated reference particle.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Parameters of a fit, from ProfileFitter.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
VectorD< D > get_zero_vector_kd(int Di)
Return a dynamically sized vector of zeros.
Calculates and stores Gaussian kernel parameters.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Weight setup_particle(Model *m, ParticleIndex pi)
Set up an empty Weight.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexes get_simulation_particle_indexes() const
Rotation2D compose(const Rotation2D &a, const Rotation2D &b)
Compose two rotations a and b.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Symmetric setup_particle(Model *m, ParticleIndex pi, Float symmetric)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static XYZR setup_particle(Model *m, ParticleIndex pi)
The base class for geometry.
static Direction setup_particle(Model *m, ParticleIndex pi, algebra::Vector3D v)
IMP::core::RigidBody create_compatible_rigid_body(Hierarchy h, Hierarchy reference)
Rigidify a molecule or collection of molecules.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator for a particle which has bonds.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchy create_simplified_along_backbone(Hierarchy input, int num_res, bool keep_detailed=false)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual const ParticlesTemp get_refined(Particle *) const
Refine the passed particle into a set of particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
XYZRs create_xyzr_particles(Model *m, unsigned int num, Float radius, Float box_side=10)
Create a set of particles with random coordinates.
algebra::Transformation3D get_transformation(unsigned int i) const
Get the score of the i'th solution.
DensityMap * binarize(DensityMap *orig_map, float threshold, bool reverse=false)
Return a map with 0 for all voxels below the threshold and 1 for those above.
virtual ParticleIndexes get_all_possible_indexes() const
Get contained particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A class to store an fixed array of same-typed values.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::ScoringFunction * get_scoring_function(bool force_update=false)
IMP::algebra::Rotation3D get_rotation() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ReferenceFrame3D get_local_reference_frame(const ReferenceFrame3D &v) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
VectorD< D > get_barycenter() const
Get center of mass on simplex in embedded coordinates.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Restraint * create_bounding_volume_restraint(SingletonContainerAdaptor beads) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Line3D get_opposite() const
Get the line in the opposite direction.
virtual RestraintInfo * get_dynamic_info() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Rotation3D operator/(const Rotation3D &r) const
Compute the rotation which when composed with r gives this.
IMP::ParticleIndexPair make_unordered_particle_index_pair(IMP::ParticleIndex pi0, IMP::ParticleIndex pi1)
A single atom in a CHARMM topology.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
FFTFittingOutput * do_local_fitting(em::DensityMap *dmap, double density_threshold, atom::Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation, const std::string &angles_filename="")
Locally fit a molecule inside its density.
Store a ParticleIndexTriplets.
Represent a real cell in a grid (one within the bounding box)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::npctransport::SimulationData * startup(int argc, char *argv[])
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::Particle * get_bead(unsigned int i) const
get the i'th bead in the chain (assume valid root)
SampledDensityMap * particles2binarized_density(const ParticlesTemp &ps, Float resolution, Float apix, int sig_cutoff=3, const FloatKey &weight_key=IMP::atom::Mass::get_mass_key())
A simple class for returning XYZ Euler angles.
static LennardJones setup_particle(Model *m, ParticleIndex pi)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Storage of anchors (points and edges)
atom::Hierarchies get_fg_chain_roots() const
Triangle3D get_largest_triangle(const Vector3Ds &points)
Return the largest triangle defined by 3 points from the input.
ParticlesTemp get_obstacle_particles() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual const ParticlesTemp get_refined(Particle *p) const
Returns the fixed set of particles.
A decorator for a particle that represents a direction in 3D.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static StructureProvenance setup_particle(Model *m, ParticleIndex pi, std::string filename, std::string chain_id, int residue_offset)
Model * get_model() const
Returns the Model containing the particle.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Color get_rgb_color(double f)
Return the color for f from the RGB color map.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A particle that is the geometric centroid of other particles.
virtual ScoringFunction * create_scoring_function(double weight=1.0, double max=NO_MAX) const
Create a scoring function with only this restraint.
virtual IMP::domino::SubsetFilter * get_subset_filter(const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
IMP::Restraint * create_z_bias_restraint(SingletonContainerAdaptor ps, double k) const
em::DensityMap * remove_background(em::DensityMap *dmap, float threshold, float edge_threshold)
Returns a map containing all density without the background.
A geometric relationship between four atoms.
Gaussian3D get_gaussian_from_covariance(const Eigen::Matrix3d &covariance, const Vector3D ¢er)
Return a Gaussian centered at the origin from a covariance matrix.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DensityMap * mask_and_norm(em::DensityMap *dmap, em::DensityMap *mask)
Return a masked density, and normalize the output map within the mask region.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
An index in an infinite grid on space.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Applies a PairScore to each Pair in a list based on a predicate.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexes get_all_possible_indexes() const
Get contained particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A voxel grid in d-dimensional space.
Stores a set of SingletonContainers.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Provenance create_clone(Provenance p)
Clone provenance (including previous provenance)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Vector< double > get_solvent_accessibility(const core::XYZRs &points, double probe_radius=1.8, double density=5.0)
estimate surface accessibility of each atom.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::Plane3D get_plane() const
Get a plane that lies along the surface.
ProteinsAnchorsSamplingSpace get_part_of_sampling_space(const ProteinsAnchorsSamplingSpace &prots_ss, const Strings &prot_names)
Get the sampling space of few of the proteins.
Vector3D operator*(const Vector3D &v) const
Rotate a vector around the origin.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator for a particle transporting through a barrier.
FittingSolutions compute_fitting_scores(const ParticlesTemp &ps, DensityMap *em_map, const algebra::Transformation3Ds &transformations, bool fast_version=false, bool local_score=false, const FloatKey &wei_key=atom::Mass::get_mass_key())
Compute fitting scores for a given set of rigid transformations.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Display a Surface particle as a cylindrical disk.
Track creation of a system fragment from sampling.
ParticlesTemp create_rigid_bodies(Model *m, unsigned int n, bool no_members=false)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Cover setup_particle(Model *m, ParticleIndex pi, ParticleIndexesAdaptor members)
A simple list of fitting solutions.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Atoms get_omega_dihedral_atoms(Residue rd)
Return the atoms comprising the omega dihedral.
const ParticleIndexes & get_neighbors(ParticleIndex pi) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DensityMap * get_threshold_map(const DensityMap *orig_map, float threshold)
Return a map with 0 for all voxels below the threshold.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DensityMap * get_segment_by_masking(DensityMap *map_to_segment, DensityMap *mask, float mas_threshold)
Get a segment of the map covered by another map.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Transformation3D get_transformation_from_first_triangle_to_second(Triangle3D first_tri, Triangle3D second_tri)
Return a transformation between two triangles.
Add symmetric attribute to a particle.
Assignment get_nearest_assignment(const Subset &s, const algebra::VectorKD &embedding, ParticleStatesTable *pst)
Return the nearest assignment from an embedding.
DensityMap * create_density_map(algebra::DenseGrid3D< float > &grid)
Return a density map with the values taken from the grid.
static State setup_particle(Model *m, ParticleIndex pi, unsigned int index)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ParticleIndexes get_all_possible_indexes() const
Get contained particles.
Base class for writing geometry to a file.
ChainType get_chain_type() const
Return the chain type.
ParticlesTemp get_particles(Model *m, const ParticleIndexes &ps)
Get the particles from a list of indexes.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ParticleIndexes get_range_indexes() const =0
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Represent a cylinder in 3D.
ParticleIndexes get_all_possible_indexes() const
Get contained particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
BoundingBoxD< 3 > get_bounding_box(const Cylinder3D &g)
Bond get_bond(unsigned int i) const
Get a Bond of the ith bond.
IMP::ParticlesTemp get_beads() const
get the beads of the chain (assume valid root)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Store a ParticleIndexQuads.
SampledDensityMap * particles2density(const ParticlesTemp &ps, Float resolution, Float apix, int sig_cutoff=3, const FloatKey &weight_key=IMP::atom::Mass::get_mass_key())
Resample a set of particles into a density grid.
multifit::SettingsData * get_partial_assembly_setting_data(multifit::SettingsData *prots_sd, const Strings &prot_names)
Get the assembly data for a few of the proteins.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ExtendedGridIndexD< D > get_extended_index(const VectorD< D > &o) const
Return the index that would contain the voxel if the grid extended there.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Add scale parameter to particle.
static SlabWithPore setup_particle(Model *m, ParticleIndex pi, double thickness, double pore_radius)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Represent a subset of the particles being optimized.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Surface setup_particle(Model *m, ParticleIndex pi)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Add uncertainty to a particle.
RestraintInfo * get_dynamic_info() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A score on the distance between the surfaces of two spheres.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Atoms get_charmm_untyped_atoms(Hierarchy hierarchy)
Get all atoms in the Hierarchy that do not have CHARMM types.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
RestraintSet * get_restraint_set()
Get the restraints set up by add_all_restraints().
Statistics and order parameters about the simulations.
FormFactorTable * get_default_form_factor_table()
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Residue setup_particle(Model *m, ParticleIndex pi, ResidueType t, int index, int insertion_code)
static Representation setup_particle(Model *m, ParticleIndex pi)
virtual const ParticlesTemp get_refined(Particle *) const
Refine the passed particle into a set of particles.
algebra::ReferenceFrame3D get_reference_frame() const
Get surface orientation as a reference frame.
const Plane3D & get_plane_3d_geometry(const Plane3D &g)
Hierarchy create_fragment(const Hierarchies &ps)
Create a fragment containing the specified nodes.
PartitionalClustering * create_gromos_clustering(Metric *d, double cutoff)
em::ImageHeader & get_header()
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Domain setup_particle(Model *m, ParticleIndex pi, Domain other)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DynamicListTripletContainer * add_predicate(TripletPredicate *predicate, int value)
Track creation of a system fragment by combination.
Color get_interpolated_rgb(const Color &a, const Color &b, double f)
Return a color interpolated between a and b in RGB space.
Color get_hot_color(double f)
Return the color for f from the hot color map.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Atom get_atom(Residue rd, AtomType at)
Return a particle atom from the residue.
Add helix parameters to a particle.
Represent a triangle in 3D.
Surface get_surface() const
Get the surface being moved.
ParticleIndexes get_all_possible_indexes() const
Get contained particles.
Stores a set of QuadContainers.
static XYZ setup_particle(Model *m, ParticleIndex pi)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexPair get_contribution_particle_indexes(int i) const
Get the particle indexes from a contribution.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchies get_children() const
Return the children in the order they were added.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
SampledDensityMap * get_model_dens_map() const
Return the predicted density map of the model.
Restraint * create_excluded_volume(Model *m, const ParticleIndexes &ps, double k, std::string name)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticlesTemp get_beads()
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A more IMP-like version of the std::vector.
TextOutput create_temporary_file(std::string prefix="imp_temp", std::string suffix="")
Create a temporary file. The path can be extracted from the TextOutput.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Atom get_atom(const CHARMMResidueTopology *current_residue, const CHARMMResidueTopology *previous_residue, const CHARMMResidueTopology *next_residue, const std::map< const CHARMMResidueTopology *, Hierarchy > &resmap) const
Map the endpoint to an Atom particle.
The end of a bond, angle, dihedral, improper, or internal coordinate.
A class storing the rotated coordinates of the atoms in the residue.
VectorD< D > get_basis_vector_kd(int Di, unsigned int coordinate)
Return the basis vector for the given coordinate.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Plane3D get_base_plane() const
Get the plane supporting the base of the cone.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
UnaryFunction * get_function(unsigned int i)
Get function at index.
core::MonteCarloMover * create_serial_mover(Model *m, const ParticleIndexes &pis)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Restraint * get_bounding_volume_restraint(bool update=false)
static Uncertainty setup_particle(Model *m, ParticleIndex pi, Float uncertainty)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
em::FittingSolutions pca_based_rigid_fitting(core::RigidBody rb, Refiner *rb_refiner, em::DensityMap *em_map, Float threshold, FloatKey wei_key=atom::Mass::get_mass_key(), algebra::PrincipalComponentAnalysis dens_pca_input=algebra::PrincipalComponentAnalysis())
Compute fitting scores for a given set of rigid transformations.
ParticlesTemp get_output_particles(const ModelObjectsTemp &mos)
Return all the output particles for a given ModelObject.
ParticleIndexPair get_contribution(int i) const
Get the particles in a contribution.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static SlabWithCylindricalPore setup_particle(Model *m, ParticleIndex pi, double thickness, double radius)
The topology of a single residue in a model.
const BoundingBoxD< D > & operator+=(const BoundingBoxD< D > &o)
Extend the current bounding box to include the other.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Add switching parameter to particle.
Add resolution to a particle.
CHARMM force field parameters.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Centroid setup_particle(Model *m, ParticleIndex pi, ParticleIndexesAdaptor members)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
VectorD< D > get_ones_vector_kd(unsigned int Di, double v=1)
Return a vector of ones (or another constant)
Object used to hold a set of restraints.
algebra::GridD< 3, algebra::DenseGridStorageD< 3, float >, float > get_grid(DensityMap *in_map)
Return a dense grid containing the voxels of the passed density map.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
RestraintInfo * get_static_info() const
Implement a constraint on the Model.
A particle which covers a set of other particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Molecule setup_particle(Model *m, ParticleIndex pi)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Restraint * create_excluded_volume_restraint(const Hierarchies &hs, double resolution=-1)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Bond create_custom_bond(Bonded a, Bonded b, Float length, Float stiffness=-1)
Connect the two wrapped particles by a custom bond.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Rotation3D get_rotation_about_axis(const Vector3D &axis, double angle)
Generate a Rotation3D object from a rotation around an axis.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
SphereGeometry * create_geometry(const algebra::Sphere3D &t, std::string name="algebra::Sphere3D"+"%1""%")
Class for storing model, its restraints, constraints, and particles.
Filter atom pairs for SOAP.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Segment3D get_shortest_segment(const Segment3D &s, const Vector3D &p)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DOF const * get_dof(unsigned int i) const
Returns the i'th dof over which this sampler works.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Object * get_data(ModelKey mk) const
Get back some data stored in the model.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator for a point particle that has an electrostatic charge.
ModelObjectsTemps get_interactions() const
Get the interacting sets induced by this ModelObject.
static SlabWithToroidalPore setup_particle(Model *m, ParticleIndex pi, double thickness, double major_radius)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A simple decorator which adds a name to a particle.
Hierarchies read_multimodel_mmcif(TextInput input, Model *model, PDBSelector *selector=get_default_pdb_selector())
Read all models from the mmCIF file.
ParticleIndexes get_particle_indexes_value(unsigned i) const
Get the value for the ith ParticleIndexes mapping.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Restraint * create_current_decomposition() const
Decompose this restraint into constituent terms for the current conf.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Class for handling density maps.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Store a subset of a subset or assignment.
IMP::algebra::BoundingBoxD< 3 > calculate_particles_bounding_box(const Particles &ps)
Calculate the parameters of the particles bounding box.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticlesTemp get_selected_particles(bool with_representation=true) const
Get the selected particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::algebra::Transformation3D get_transformation_aligning_first_to_second(const Vector3DsOrXYZs0 &source, const Vector3DsOrXYZs1 &target)
Compute the rigid transform bringing the first point set to the second.
Transformation2D get_rotation_about_point(const Vector2D &point, const Rotation2D &rotation)
Generate a Transformation2D object from a rotation around a point.
Base class for a simple primitive-like type.
Add uncertainty to a particle.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A Gaussian distribution in 3D.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Provenance get_previous() const
Display a reference frame.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Class for sampling a density map from particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Representation of one degree of freedom (DOF).
A decorator for keeping track of copies of a molecule.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
The class represents a molecule as shells of distance from the surface.
ReferenceFrame3D get_global_reference_frame(const ReferenceFrame3D &v) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Abstract class for scoring object(s) of type ParticleIndexQuad.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Bonds get_internal_bonds(Hierarchy mhd)
Get the bonds internal to this tree.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Store strings describing the source of this structure fragment.
Particles add_impropers(Hierarchy hierarchy) const
Add impropers to the given Hierarchy using this topology, and return them.
static Hierarchy setup_particle(Model *m, ParticleIndex pi, ParticleIndexesAdaptor children=ParticleIndexesAdaptor())
Create a Hierarchy of level t by adding the needed attributes.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Rotation3D get_random_rotation_3d()
Pick a rotation at random from all possible rotations.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::Transformation3D get_transformation(unsigned int image_number) const
Get transformation that best places the model on the image.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DensityMap * get_resampled(DensityMap *input, double scaling)
Get a resampled version of the map.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
BoundingBoxD< 3 > get_bounding_box(const Segment3D &g)
Particle * get_particle(unsigned int i) const
Get ith direction particle.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Scoring associated with a SimulationData object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Simple Brownian dynamics simulator.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexPair get_contribution_sigma_indexes(int i) const
Get the sigma particle indexes from a contribution.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Image * get_projection(unsigned int i) const
Returns the projection corresponding to the state i;.
PartitionalClustering * create_diameter_clustering(Metric *d, double maximum_diameter)
ParticlesTemp get_non_optimizable_particles(ParticlesTemp const &particles)
Hierarchy get_root(Hierarchy h)
Return the root of the hierarchy.
static FilterProvenance setup_particle(Model *m, ParticleIndex pi, std::string method, double threshold, int frames)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Restraint * create_slab_restraint(SingletonContainerAdaptor beads) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchy get_parent() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator for a representation.
core::XYZR create_cover(const Selection &s, std::string name=std::string())
A particle that describes an angle between three particles.
UnaryFunction * get_function(unsigned int i)
Get function at index.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
const Cone3D & get_cone_3d_geometry(const Cone3D &g)
The standard decorator for manipulating molecular structures.
A Cartesian vector in D-dimensions.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
RestraintSet * create_elastic_network(const Particles &ps, Float dist_cutoff, Float strength)
Create an elastic network restraint set.
Common base class for heavy weight IMP objects.
DensityMap * multiply(const DensityMap *m1, const DensityMap *m2)
Return a density map for which voxel i contains the result of m1[i]*m2[i].
ExtendedGridIndexD< D > get_minimum_extended_index() const
Return the ExtendedGridIndexD of all zeros.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::algebra::Transformation3D get_rotation_about_joint_in_parent_coordinates() const
Hierarchy create_protein(Model *m, std::string name, double target_radius, int number_of_residues, int first_residue_index=0, double volume=-1)
Create a coarse grained molecule.
ParticleIndexes get_particle_indexes(ParticlesTemp const &particles)
StereochemistryPairFilter * get_full_pair_filter()
Get a PairFilter including everything from original topology.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual IMP::domino::SubsetFilter * get_subset_filter(const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
A decorator for wrapping a particle representing a molecular bond.
FixedXYZ get_fixed_xyz_from_rotation(const Rotation3D &r)
The inverse of rotation_from_fixed_xyz()
PairScore * get_pair_score() const
Return the pair score used for scoring.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Atoms get_psi_dihedral_atoms(Residue rd)
Return the atoms comprising the psi dihedral.
A decorator for a particle representing an atom.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Abstract class for scoring object(s) of type ParticleIndex.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ScoreStates maintain invariants in the Model.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticlesTemp get_order(const Subset &s, const SubsetFilterTables &sft)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Mass setup_particle(Model *m, ParticleIndex pi, Float mass)
ExtendedGridIndexD< D > get_extended_index(const VectorD< D > &o) const
Return the index that would contain the voxel if the grid extended there.
Bond create_bond(Bonded a, Bonded b, Int t)
Connect the two wrapped particles by a bond.
FFTFittingOutput * do_global_fitting(em::DensityMap *dmap, double density_threshold, atom::Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=true, int num_angle_per_voxel=1, const std::string &angles_filename="")
Fit a molecule inside its density.
Rotation2D get_identity_rotation_2d()
Build an identity rotation in 2D.
Plane3D get_opposite() const
Return the plane with the opposite normal.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
const IMP::algebra::VectorD< D > & get_point(unsigned int i) const
Get one of the endpoints.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Track creation of a system fragment by filtering.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
PartitionalClustering * create_connectivity_clustering(Metric *metric, double dist)
virtual IMP::domino::SubsetFilter * get_subset_filter(const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Add nuisance parameter to particle.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Rotation3D get_inverse() const
Return the rotation which undoes this rotation.
SimulationData * get_sd()
DensityHeader create_density_header(const algebra::BoundingBoxD< 3 > &bb, float spacing)
Create a header from a bounding box in 3D.
virtual ParticleIndexes get_all_possible_indexes() const
Get contained particles.
A base class for classes which perturb particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Storage of the results from an FFT fit.
Hierarchy get_residue(Hierarchy mhd, unsigned int index)
Get the residue with the specified index.
ParticleIndexes get_selected_particle_indexes(bool with_representation=true) const
Get the indexes of the selected particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Base class for all optimizers.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
BoundingBoxD< 3 > get_bounding_box(const Cone3D &g)
static Bonded setup_particle(Model *m, ParticleIndex pi)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ParticleIndexes get_all_possible_indexes() const
Get contained particles.
static Hierarchy setup_particle(Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits())
Vector3D get_projected(const Line3D &l, const Vector3D &p)
Project a point onto the line.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Typed setup_particle(Model *m, ParticleIndex pi, ParticleType t)
virtual std::vector< DOFValues > plan(DOFValues q_from, DOFValues q_rand, ScoringFunction *sf)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
const Transformation3D & get_transformation_to() const
Return transformation from local to global coordinates.
const VectorD< D > & get_unit_cell() const
Return the unit cell, relative to the origin.
SurfaceGeometry * create_geometry(const Surface s, std::string name=std::string("SurfaceGeometry%1%"))
Create a geometry from a Surface.
container::PredicatePairsRestraint * get_predicates_pair_restraint(bool update=false)
const Cylinder3D & get_cylinder_3d_geometry(const Cylinder3D &g)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Define the type for a type of hierarchy.
Rotation3D get_rotation_from_fixed_zyz(double Rot, double Tilt, double Psi)
Generate a rotation object from Euler Angles.
Restraint * get_slab_restraint(bool update=false)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::BoundingBoxD< 3 > get_bounding_box(const XYZRs &ps)
Get the bounding box.
A class that holds DOF values for DOFs.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexes get_all_possible_indexes() const
Get contained particles.
Hierarchy get_previous_residue(Residue rd)
Return the residue from the same chain with one lower index.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static ExampleDecorator setup_particle(Model *m, ParticleIndex pi, std::string name)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Class for adding up scores during ScoringFunction evaluation.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
PairScore * get_pair_score() const
Return the pair score used for scoring.
SecondaryStructureResidue setup_coarse_secondary_structure_residue(const Particles &ssr_ps, Model *mdl, bool winner_takes_all_per_res=false)
Coarsen some SecondaryStructureResidues.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
const ParticleIndexes & get_member_particle_indexes() const
A sphere patch is defined as all points above the plane and on the sphere.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
VectorD< D > get_random_vector_in(const BoundingBoxD< D > &bb)
Generate a random vector in a box with uniform density.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DynamicListQuadContainer * add_predicate(QuadPredicate *predicate, int value)
BoundingBoxD<-1 > get_unit_bounding_box_kd(unsigned int d)
Box with radius one.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
PartitionalClusteringWithCenter * create_bin_based_clustering(Embedding *embed, double side)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ParticleIndexes get_refined_indexes(Model *m, ParticleIndex pi) const
Return the indexes of the particles returned by get_refined()
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
GridIndexD< D > get_index(const ExtendedGridIndexD< D > &i) const
requires get_has_index(i) is true.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchy read_mol2(TextInput mol2_file, Model *model, Mol2Selector *mol2sel=nullptr)
Create a hierarchy from a Mol2 file.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static TAMDCentroid setup_particle(Model *m, ParticleIndex pi, ParticleIndexesAdaptor members)
Track creation of a system fragment from a PDB file.
Color get_display_color(unsigned int i)
Version and module information for Objects.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchy create_clone_one(Hierarchy d)
Clone the node in the Hierarchy.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static RelaxingSpring setup_particle(Model *m, ParticleIndex pi, ParticleIndex bonded_pi0, ParticleIndex bonded_pi1, double equilibrium_rest_length_factor, double rest_length_diffusion_coefficient)
FittingSolutions local_rigid_fitting_around_point(Particle *p, Refiner *refiner, const FloatKey &weight_key, DensityMap *dmap, const algebra::Vector3D &anchor_centroid, OptimizerStates display_log, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=.3, bool fast=false)
Local rigid fitting of a rigid body around a center point.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Holds header data for optimization.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A class to store a set of configurations of a model.
Statistics * get_statistics()
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual IMP::domino::SubsetFilter * get_subset_filter(const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator for a particle with x,y,z coordinates.
Stores a set of TripletContainers.
static Angle setup_particle(Model *m, ParticleIndex pi, core::XYZ a, core::XYZ b, core::XYZ c)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
RestraintInfo * get_dynamic_info() const
A shared container for Quads.
virtual IMP::domino::SubsetFilter * get_subset_filter(const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
RestraintInfo * get_dynamic_info() const
static Scale setup_particle(Model *m, ParticleIndex pi)
ExtendedGridIndexD< D > get_extended_index(const GridIndexD< D > &index) const
Convert an index back to an extended index.
static KinematicNode setup_particle(Model *m, ParticleIndex pi, KinematicForest *owner)
DensityMap * get_max_map(DensityMaps maps)
Return a map where each voxel is the maximum value from the input maps.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DensityMap * create_density_map(const DensityMap *other)
Create a copy of another map.
Bonded get_bonded(unsigned int i) const
Get the atom i of the bond.
virtual IMP::domino::SubsetFilter * get_subset_filter(const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
DensityHeader * get_header_writable()
Returns a pointer to the header of the map in a writable version.
Restraint * create_internal_connectivity_restraint(const Selection &s, double k, std::string name="Connectivity%1%")
Create a restraint connecting the selection.
ProteomicsData * read_proteomics_data(const char *proteomics_fn)
Proteomics reader.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::Restraint * create_weighted_excluded_volume_restraint(core::RigidBody rb1, core::RigidBody rb2, FloatKey shell_key=FloatKey("surf_ind"))
Create a weighted excluded volume restraint between two rigid bodies.
BoundingBoxD< 3 > get_bounding_box(const Ellipsoid3D &g)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A shared container for Singletons.
A decorator for a particle that has a Lennard-Jones potential well.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Rotation3D get_interpolated(const Rotation3D &a, const Rotation3D &b, double f)
Interpolate between two rotations.
static Voxel setup_particle(Model *m, ParticleIndex pi, algebra::Vector3D position, Float radius, Float density)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchy get_child(unsigned int i) const
Get the ith child based on the order they were added.
static SoftwareProvenance setup_particle(Model *m, ParticleIndex pi, std::string name, std::string version, std::string location)
Rotation3D get_rotation_from_vector4d(const VectorD< 4 > &v)
Compute a rotation from an unnormalized quaternion.
BoundingBoxD<-1 > get_cube_kd(unsigned int d, double radius)
Cube with radius of length side.
virtual ParticleIndexes const & get_refined_indexes_by_ref(Model *m, ParticleIndex pi) const
Return the indexes of the particles returned by get_refined()
Rotation3D get_rotation_taking_first_to_second(const Vector3D &v1, const Vector3D &v2)
Create a rotation from the first vector to the second one.
Hierarchy read_pdb(TextInput input, Model *model, PDBSelector *selector=get_default_pdb_selector(), bool select_first_model=true)
Read all the molecules in the first model of the PDB file.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Colored setup_particle(Model *m, ParticleIndex pi, Color color)
DensityMap * get_binarized_interior(DensityMap *dmap)
Return a binarized map with 1 for voxels that are internal in the input map.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Report key:value information on restraints.
virtual const ParticlesTemp get_refined(Particle *a) const =0
Refine the passed particle into a set of particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexes get_all_possible_indexes() const
Get contained particles.
Rotation2D get_rotation_to_x_axis(const Vector2D &v)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static ClusterProvenance setup_particle(Model *m, ParticleIndex pi, int members)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator for a spring particle connecting two diffusing particles.
Writer * create_writer(std::string filename)
Color get_gnuplot_color(double f)
Return colors using the gnuplot default color map.
static const IMP::core::HierarchyTraits & get_traits()
Get the molecular hierarchy HierarchyTraits.
Stores a set of PairContainers.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Resolution setup_particle(Model *m, ParticleIndex pi, Float resolution)
A decorator for a particle that represents a surface, its coordinates, and orientation.
A particle that describes a dihedral angle between four particles.
static DirectionAngle setup_particle(Model *m, ParticleIndex pi, ParticleIndexPair ds)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexes get_movable_particles() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Particle * get_particle() const
Returns the particle decorated by this decorator.
SecondaryStructureResidues setup_coarse_secondary_structure_residues(const Particles &ssr_ps, Model *mdl, int coarse_factor, int start_res_num, bool winner_takes_all_per_res=false)
Store all parameters for a simulation.
static Uncertainty setup_particle(Model *m, ParticleIndex pi, Float uncertainty)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
An axis-aligned bounding box.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Copy setup_particle(Model *m, ParticleIndex pi, Int number)
virtual IMP::domino::SubsetFilter * get_subset_filter(const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual const ParticlesTemp get_refined(Particle *) const
Refine the passed particle into a set of particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Vector< Atoms > get_chi_dihedral_atoms(Residue rd)
Transformation3D get_identity_transformation_3d()
Return a transformation that does not do anything.
const Segment3D & get_segment_3d_geometry(const Segment3D &g)
core::RigidBodies get_rigid_bodies()
Hierarchies read_multimodel_pdb_or_mmcif(TextInput input, Model *model, PDBSelector *selector=get_default_pdb_selector())
Read all models from the PDB or mmCIF file.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Joint that is parameterized as a dihedral angle between two planes.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Simple implementation of segments in 3D.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
RestraintSet * create_elastic_network(const Particles &ps, Float dist_cutoff, Float strength)
Create an elastic network restraint set.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
const Ellipsoid3D & get_ellipsoid_3d_geometry(const Ellipsoid3D &g)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator for a residue with probability of secondary structure.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticlesTemp get_optimizable_particles(ParticlesTemp const &particles)
Use this to add an advanced flag to the program.
ParticlesTemp get_input_particles(const ModelObjectsTemp &mos)
Return all the input particles for a given ModelObject.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
HistogramD< D > get_probability_distribution_function() const
Parameters of a weighted fit, from WeightedProfileFitter.
FittingSolutions local_rigid_fitting(Particle *p, Refiner *refiner, const FloatKey &weight_key, DensityMap *dmap, OptimizerStates display_log, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=.3, bool fast=true)
Local rigid fitting of a rigid body.
SimulationData * get_simulation_data()
return SimulationData object associated with this factory
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator for a residue.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A rigid body that is connected by a joint to other rigid bodies.
virtual ParticleIndexes get_all_possible_indexes() const =0
Get contained particles.
IMP::ScoringFunction * get_custom_scoring_function(const RestraintsTemp &extra_restraints, SingletonContainerAdaptor non_optimizable_beads, SingletonContainerAdaptor optimizable_beads, bool is_attr_interactions_on=true) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Periodically dump the state of all associated objects into the RMF file.
SurfaceGeometry * get_constrained_surface_geometry(const Surface s, std::string name="SurfaceGeometry%1%")
Get surface geometry constrained to the surface.
Abstract predicate function.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Joint * add_edge(IMP::core::RigidBody parent, IMP::core::RigidBody child)
Rotation3D get_rotation_from_matrix(double m00, double m01, double m02, double m10, double m11, double m12, double m20, double m21, double m22)
Generate a Rotation3D object from a rotation matrix.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Transformation3D get_transformation_3d(const Transformation2D &t2d)
Build a 3D transformation from a 2D one.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Represents a scoring function on the model.
Base class for joints between rigid bodies in a kinematic tree.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchies read_multimodel_pdb(TextInput input, Model *model, PDBSelector *selector=get_default_pdb_selector())
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Store a configuration of a subset.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static CombineProvenance setup_particle(Model *m, ParticleIndex pi, int runs, int frames)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::PairContainer * create_close_beads_container(SingletonContainerAdaptor non_optimiziable_beads, SingletonContainerAdaptor optimizable_beads) const
ParticlesTemp get_simulation_particles() const
Returns the set of particles used in the simulation.
atom::Hierarchies create_hierarchies_with_sites(RMF::FileConstHandle fh, Model *m)
Associate an integer "state" index with a hierarchy node.
static SecondaryStructureResidue setup_particle(Model *m, ParticleIndex pi, Float prob_helix, Float prob_strand, Float prob_coil)
algebra::Rotation3D get_rotation() const
Returns the rotation for the 3 projection angles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchies get_hierarchies() const
Return the hierarchies that the Selection was constructed with.
Hierarchy get_representation(double resolution, RepresentationType type=BALLS)
Get children at the resolution closest to resolution of the passed type.
const Line3D & get_line_3d_geometry(const Line3D &g)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static Diffusion setup_particle(Model *m, ParticleIndex pi, Float D)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
SurfaceShellDensityMap * particles2surface(const ParticlesTemp &ps, Float apix, const FloatKey &weight_key=IMP::atom::Mass::get_mass_key())
Resample a set of particles into a density grid.
static ProjectionParameters setup_particle(Model *m, ParticleIndex pi)
static SampleProvenance setup_particle(Model *m, ParticleIndex pi, std::string method, int frames, int iterations, int replicas)
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
static TAMDParticle setup_particle(Model *m, ParticleIndex pi, ParticleIndex pi_ref, Float tsf, Float fsf)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
WeightedFitParameters fit_profile(ProfilesTemp partial_profiles, double min_c1=0.95, double max_c1=1.05, double min_c2=-2.0, double max_c2=4.0, bool use_offset=false) const
fit profiles by optimization of c1/c2 and weights
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::VectorD< 4 > get_rotational_derivatives() const
Get the derivatives of the quaternion.
IMP::algebra::Transformation3D get_transformation_aligning_first_to_second(const IMP::atom::Selection &s1, const IMP::atom::Selection &s2)
Get the transformation to align two selections.
Residue get_residue(Atom d, bool nothrow=false)
Return the Residue containing this atom.
Shared optimizer state that is invoked upon commitment of new coordinates.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchy get_root(Hierarchy h)
Return the root of the hierarchy.
Track creation of a system fragment from clustering.
A filter that excludes bonds, angles and dihedrals.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Profile * compute_profile(Particles particles, double min_q=0.0, double max_q=0.5, double delta_q=0.001, FormFactorTable *ft=get_default_form_factor_table(), FormFactorType ff_type=HEAVY_ATOMS, bool hydration_layer=true, bool fit=true, bool reciprocal=false, bool ab_initio=false, bool vacuum=false, std::string beam_profile_file="")
profile calculation for particles and a given set of options
Particles create_angles(Particles bonds) const
Auto-generate Angle particles from the passed list of Bond particles.
static Reference setup_particle(Model *m, ParticleIndex pi, ParticleIndexAdaptor reference)
Rotation3D get_identity_rotation_3d()
Return a rotation that does not do anything.
BoundingBoxD< 3 > get_bounding_box(const Torus3D &g)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Color get_gray_color(double f)
Return the a grayscale value for f.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
KinematicForest * get_kinematic_forest()
Class to handle individual particles of a Model object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual const ParticlesTemp get_refined(Particle *) const
Refine the passed particle into a set of particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
const VectorD< D > & get_unit_cell() const
Return the unit cell, relative to the origin.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
em::FittingSolutions fit_cn_assembly(atom::Hierarchies mhs, int dn_symm_deg, em::DensityMap *dmap, float threshold, const AlignSymmetric &aligner, bool sample_translation=false, bool fine_rotational_sampling=true)
Fit a symmetric model to its density.
Bond get_bond(Bonded a, Bonded b)
Get the bond between two particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexes get_indexes(int predicate_value) const
Molecular dynamics optimizer on 1-D and 3-D particles.
Restraint * create_distance_restraint(const Selection &n0, const Selection &n1, double x0, double k, std::string name="Distance%1%")
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Add symmetric attribute to a particle.
Class to manage registration results.
Hierarchies get_representations(RepresentationType type=BALLS)
Return all children at all resolutions.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Representation get_representation(Hierarchy h, bool nothrow=false)
Return the Representation object containing this hierarchy.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexes get_all_possible_indexes() const
Get contained particles.
The topology of a single CHARMM segment in a model.
Color get_jet_color(double f)
Return the color for f from the jet color map.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexes get_particle_indexes()
Get all particle indexes.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::Segment3D get_segment_connecting_first_to_second(const Line3D &a, const Line3D &b)
Get shortest possible segment from the first line to the second.
A decorator for classifying particles in your system.
virtual IMP::domino::SubsetFilter * get_subset_filter(const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
static Key< ID > add_alias(Key< ID > old_key, std::string new_name)
Make new_name an alias for old_key.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::PairContainer * get_close_beads_container(bool update=false)
FittingSolutions local_rigid_fitting_around_points(Particle *p, Refiner *refiner, const FloatKey &wei_key, DensityMap *dmap, const algebra::Vector3Ds &anchor_centroids, OptimizerStates display_log, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=.3)
Local rigid fitting of a rigid body around a set of center points.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::UnitSimplexKD get_unit_simplex() const
Get unit simplex on which weight vector lies.
virtual const IMP::algebra::Transformation3D & get_transformation_child_to_parent() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
FittingSolutions local_rigid_fitting_grid_search(const ParticlesTemp &ps, const FloatKey &wei_key, DensityMap *dmap, Int max_voxels_translation=2, Int translation_step=1, Float max_angle_in_radians=0.174, Int number_of_rotations=100)
Local grid search rigid fitting.
Store info for a chain of a protein.
Bonded get_bonded(unsigned int i) const
Get a Bonded of the ith bonded particle.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Restraint * create_chain_restraint(Model *m, const ParticleIndexes &ps, double length_factor, double k, std::string name)
A decorator for helping deal with a generalized hierarchy.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexes get_member_indexes() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::Gaussian3D get_gaussian() const
create Gaussian3D from these attributes
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
const Torus3D & get_torus_3d_geometry(const Torus3D &g)
Score the model efficiently when a small number of particles are changed.
Selection create_clone()
Make a clone of this Selection.
A decorator for a diffusing particle with a diffusion coefficient.
Track how parts of the system were created.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DensityMap * get_transformed(const DensityMap *input, const algebra::Transformation3D &tr, double threshold)
Return a new density map containing a rotated version of the old one.
const ParticleIndexes & get_body_member_particle_indexes() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A decorator for a rigid body.
The topology of a complete CHARMM model.
BoundingBoxD< 3 > get_bounding_box(const Line3D &g)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Dynamically build a histogram embedded in D-dimensional space.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::Transformation3D get_transformation_aligning_first_to_second(const Selection &s1, const Selection &s2)
Get the transformation to align two selections.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A shared container for Triplets.
DynamicListSingletonContainer * add_predicate(SingletonPredicate *predicate, int value)
virtual const IMP::algebra::Transformation3D & get_transformation_child_to_parent_no_checks() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
SoapPairFilter * get_pair_filter()
Get a filter that returns pairs that this score should use.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchies get_by_type(Hierarchy mhd, GetByType t)
Gather all the molecular particles of a certain level in the hierarchy.
ParticleIndexes get_all_possible_indexes() const
Get contained particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
algebra::Transformation3D get_internal_transformation() const
StereochemistryPairFilter * get_pair_filter()
Get a PairFilter that excludes all stereochemical pairs.
Subset get_subset() const
Return the subset corresponding to all the particles.
ResidueRotamer get_rotamer(const IMP::atom::Residue &rd, double thr) const
get the coordinates of the residue atoms
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Vector< Pointer< O > > create(RMF::NodeConstHandle rt)
Hierarchy create_simplified_assembly_from_volume(Hierarchy h, double resolution)
FGChain * get_fg_chain(atom::Hierarchy root)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Define and manipulate a kinematic structure over a model.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
container::PredicatePairsRestraint * create_predicates_pair_restraint(PairContainer *bead_pairs, bool is_attr_interactions_on=true) const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Abstract class for scoring object(s) of type ParticleIndexTriplet.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::core::RigidBody create_rigid_body(const Hierarchies &h, std::string name=std::string("created rigid body"))
Rigidify a molecule or collection of molecules.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Tag part of the system to track how it was created.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Hierarchies get_leaves(Hierarchy h)
static Chain setup_particle(Model *m, ParticleIndex pi, std::string id)
CHARMMParameters * get_all_atom_CHARMM_parameters()
Hierarchies get_leaves(const Selection &h)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
boost::tuple< Restraint *, Object * > create_backbone_restraint(double rest_length_factor, double backbone_k, ParticlesTemp beads, std::string name) const
Create a backbone bond restraint over beads according to class flags.
Select which atoms to read from a PDB file.
PartitionalClustering * create_centrality_clustering(Metric *d, double far, int k)
A decorator for a molecule.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexPair get_contribution_sigmas(int i) const
Get the sigma nuisances in a contribution.
static ScriptProvenance setup_particle(Model *m, ParticleIndex pi, std::string filename)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Select hierarchy particles identified by the biological name.
DOFValues get_sample() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
atom::BrownianDynamics * get_bd(bool recreate=false)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ParticleIndexes get_indexes(const ParticlesTemp &ps)
Get the indexes from a list of particles.
DensityMap * get_segment(DensityMap *map_to_segment, int nx_start, int nx_end, int ny_start, int ny_end, int nz_start, int nz_end)
Get a segment of the map according to xyz indexes.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Store a ParticleIndexPairs.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Atoms get_atoms(const CHARMMResidueTopology *current_residue, const CHARMMResidueTopology *previous_residue, const CHARMMResidueTopology *next_residue, const std::map< const CHARMMResidueTopology *, Hierarchy > &resmap) const
Map the bond to a list of Atom particles.
virtual ParticleIndexes const & get_refined_indexes_by_ref(Model *m, ParticleIndex pi) const
Return the indexes of the particles returned by get_refined()
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
static RigidBody setup_particle(Model *m, ParticleIndex pi, ParticleIndexesAdaptor ps)
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Slice get_slice(Restraint *r, const Subset &s) const
Return the slice for that restraint given the subset.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Rotation3D get_rotation_from_fixed_zxz(double phi, double theta, double psi)
Initialize a rotation from Euler angles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ScoringFunction * get_scoring_function() const
Return the scoring function that is being used.
Represent a sphere in D-dimensions.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
GridIndexD< D > add_voxel(const ExtendedGridIndexD< D > &i, const VT &gi)
Add a voxel to the storage, this voxel will now have a GridIndex3D.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ModelObjectsTemps do_get_interactions() const
Hierarchy get_next_residue(Residue rd)
Return the residue from the same chain with one higher index.
const Profile * get_profile() const
Abstract single variable functor class for score functions.
virtual const ParticlesTemp get_refined(Particle *) const
Refine the passed particle into a set of particles.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
CHARMMTopology * create_topology(Hierarchy hierarchy) const
Create topology that corresponds to the primary sequence of the Hierarchy.
rmf::SaveOptimizerState * get_rmf_sos_writer()
Restraint * create_connectivity_restraint(const Selections &s, double k, std::string name="Connectivity%1%")
Create a restraint connecting the selections.
virtual IMP::domino::SubsetFilter * get_subset_filter(const IMP::domino::Subset &s, const IMP::domino::Subsets &excluded) const
Track creation of a system fragment from running a script.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
RestraintInfo * get_static_info() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
DensityMap * get_cropped(float threshold)
Create and return a new cropped map.
ResidueType get_residue_type(char c)
Get the residue type from the 1-letter amino acid code.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Class for adding derivatives from restraints to the model.
static Vector< std::string > get_all_strings()
Get a list of all of the keys of this type.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A particle that is the center of mass of other particles.
A decorator for an atom that has a defined CHARMM type.
Model * get_model()
return model associated with this factory
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Transformation3D get_random_local_transformation(Vector3D origin, double max_translation=5., double max_angle_in_rad=0.26)
Get a local transformation.
2D Electron Microscopy images in IMP
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Transformation2D get_identity_transformation_2d()
Return a transformation that does not do anything.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
BoundingBoxD< 3 > get_bounding_box(const SpherePatch3D &g)
A base class for clustering results where each item is in one cluster.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
IMP::algebra::ReferenceFrame3D get_reference_frame() const
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
A restraint is a term in an IMP ScoringFunction.
RestraintInfo * get_static_info() const
IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
Slice get_slice(Subset outer, Subset inner, const Subsets &excluded)
Rotation2D get_random_rotation_2d()
Build an identity rotation in 2D.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
ScoringFunction * get_scoring_function() const
Return the scoring function that is being used.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
virtual ::IMP::VersionInfo get_version_info() const
Get information about the module and version of the object.
atom::Hierarchy create_coarse_molecule_from_density(em::DensityMap *dmap, float dens_threshold, int num_beads, Model *mdl, float bead_radius)
Coarsen a density map based on voxels clustering.
A decorator for a particle with x,y,z coordinates and a radius.